Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1620 ATGAAGTTATCACGCTTCCTGTCTTCGATCAGCAGCAATAGCAGGAACCATTTTGAACAAATTCTCTCTAAGAAAACTTCTGGGTTGTATCGTTTTTCATCTCAAGCCTCCCATGGGAATGGCAATGGAATTCCAGGTGCAACTCCCCAGGTGTTTGCTTCTTATGCTGTGTTTAAGGGCAAAGCTTCACTCTCTATCACTCCTCGTCATCCAACTTTCACTCGATTAAATTCTGGTAACCTTGTAATTAATCGCCGTGGTTCTGTTATGTTCACATTCTGTCCTGCCATTGGGGAACGCAAGTATGATTGGGAGCGCAAACAGTTGTTTGCGTTGTCCCCGACCGAGGTCGGTACTTTAATAAGCTTGGGTCCCAAAGACTCTTGTGAATTCTTCCATGACCCTGCTATGCTTTCAAGCAATGCGGGTCAAGTAAGGAAGAACTTATCGATTAAGTCTCAGTCAGAAGGCAATGGCTATTTCATCTCTTTGAGTGTTGTTAATAATATTCTGAAAACCAAAGAAAACTTCTATGTTCCATTCACAATAGGCGAATTTTCAGTGATGAAGACAGCTTGCAGTTTTGCATTGCCGCACATTCTTGGTTGGGATCGGTTGTCCAAACTGACAAACTTGGAAGAAGATGTGGTGGTTCCATCGAAGGTGGTGGATCGTCAAGCTTTGAGTTTAGAGTGGGAAAAATGA 705 42.98 MKLSRFLSSISSNSRNHFEQILSKKTSGLYRFSSQASHGNGNGIPGATPQVFASYAVFKGKASLSITPRHPTFTRLNSGNLVINRRGSVMFTFCPAIGERKYDWERKQLFALSPTEVGTLISLGPKDSCEFFHDPAMLSSNAGQVRKNLSIKSQSEGNGYFISLSVVNNILKTKENFYVPFTIGEFSVMKTACSFALPHILGWDRLSKLTNLEEDVVVPSKVVDRQALSLEWEK 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 43049349 43051926 - evm.model.ptg000002l.39 HCH12g1620 556467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1620 234 SUPERFAMILY ssDNA-binding transcriptional regulator domain 49 214 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH12g1620 234 Gene3D Transcriptional Coactivator Pc4; Chain A 46 214 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH12g1620 234 Pfam Whirly transcription factor 57 191 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
HCH12g1620 234 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 35 234 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1620 K26561 - - csv:101219085 259.996
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1620 HCH-Chr12:43049349 HCH4g1629 HCH-Chr4:15261388 5.30E-43 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH4g1629 . 95 281 Whirly Transcription Factor Family AT1G14410 82.4 2.2e-93 339.0
HCH12g1620 . 41 234 Whirly Transcription Factor Family AT1G71260 62.1 8.0e-63 237.3
HCH4g1629 . 97 281 Whirly Transcription Factor Family AT2G02740 80.6 1.7e-90 329.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012554 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32759 PF08536 Whirly 1.30E-53 CL0609 HCH TF