Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1620 ATGAAGTTATCACGCTTCCTGTCTTCGATCAGCAGCAATAGCAGGAACCATTTTGAACAAATTCTCTCTAAGAAAACTTCTGGGTTGTATCGTTTTTCATCTCAAGCCTCCCATGGGAATGGCAATGGAATTCCAGGTGCAACTCCCCAGGTGTTTGCTTCTTATGCTGTGTTTAAGGGCAAAGCTTCACTCTCTATCACTCCTCGTCATCCAACTTTCACTCGATTAAATTCTGGTAACCTTGTAATTAATCGCCGTGGTTCTGTTATGTTCACATTCTGTCCTGCCATTGGGGAACGCAAGTATGATTGGGAGCGCAAACAGTTGTTTGCGTTGTCCCCGACCGAGGTCGGTACTTTAATAAGCTTGGGTCCCAAAGACTCTTGTGAATTCTTCCATGACCCTGCTATGCTTTCAAGCAATGCGGGTCAAGTAAGGAAGAACTTATCGATTAAGTCTCAGTCAGAAGGCAATGGCTATTTCATCTCTTTGAGTGTTGTTAATAATATTCTGAAAACCAAAGAAAACTTCTATGTTCCATTCACAATAGGCGAATTTTCAGTGATGAAGACAGCTTGCAGTTTTGCATTGCCGCACATTCTTGGTTGGGATCGGTTGTCCAAACTGACAAACTTGGAAGAAGATGTGGTGGTTCCATCGAAGGTGGTGGATCGTCAAGCTTTGAGTTTAGAGTGGGAAAAATGA 705 42.98 MKLSRFLSSISSNSRNHFEQILSKKTSGLYRFSSQASHGNGNGIPGATPQVFASYAVFKGKASLSITPRHPTFTRLNSGNLVINRRGSVMFTFCPAIGERKYDWERKQLFALSPTEVGTLISLGPKDSCEFFHDPAMLSSNAGQVRKNLSIKSQSEGNGYFISLSVVNNILKTKENFYVPFTIGEFSVMKTACSFALPHILGWDRLSKLTNLEEDVVVPSKVVDRQALSLEWEK 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 43049349 43051926 - evm.model.ptg000002l.39 HCH12g1620 556467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1620 234 SUPERFAMILY ssDNA-binding transcriptional regulator domain 49 214 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH12g1620 234 Gene3D Transcriptional Coactivator Pc4; Chain A 46 214 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH12g1620 234 Pfam Whirly transcription factor 57 191 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
HCH12g1620 234 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 35 234 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1620 HCH-Chr12:43049349 HCH4g1629 HCH-Chr4:15261388 5.30E-43 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32759 PF08536 Whirly 1.30E-53 CL0609 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1620 K26561 - csv:101219085 259.996