Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1628 ATGGCTTCCTTAGCAGCATCCACCGCTGCTGCTTCCCTTGGTGTCTCTGAAATGCTAAGAAATCCCCTTAGCTTTAATGGCTCCTCAAGGTCTGCACCCAATGCTTCAAACCCAGTCACCAGCTTCAAGACTGTTGCACTTTTTGGAAAGAAGCCTCCAGTGAAGCCAAAGCCTTCTGCTGCAGCTCCAGTCAACGATGAGCTCGCCAAGTGGTATGGTCCTGACAGAAGGATTTTCTTGCCTGATGGGCTCTTAGATCGATCTGAGATCCCCGAGTACTTGAACGGAGAAGTACCCGGAGATTATGGTTATGATCCTTTTGGGCTTAGCAAAAAACCAGATGACTTCGCCAAATATCAGGCATTTGAGTTGATCCACGCACGGTGGGCCATGCTTGGGGCCGCTGGTTTTATAATCCCTGAGGCCTTCAACAAATTTGGTGCCAATTGTGGACCTGAGGCTGTTTGGTTCAAGACTGGAGCTTTGTTACTGGATGGAAATACATTGAATTATTTTGGAAAGAGCATTCCCATCAATCTCATTGCTGCCGTTATTGCGGAAGTTGTCCTCGTTGGCGGCGCAGAATATTACCGAATTACAAACGGTTTGGATCTTGAGGACAAGCTTCACCCCGGTGGCCCTTTTGACCCGTTGGGACTGGCAGATGATCCAGACCAAGCTGCAATATTGAAGGTGAAGGAGATCAAGAATGGTAGACTGGCAATGTTTGCAATGCTTGGATTTTTCATTCAAGCTTACGTGACTGAAGAAGGTCCTGTATAA 783 47.51 MASLAASTAAASLGVSEMLRNPLSFNGSSRSAPNASNPVTSFKTVALFGKKPPVKPKPSAAAPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPDDFAKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKSIPINLIAAVIAEVVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTEEGPV 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 43203493 43234033 - evm.model.ptg000002l.31 HCH12g1628 556475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1628 260 Gene3D Chlorophyll a/b binding protein domain 78 260 - -
HCH12g1628 260 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 19 260 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
HCH12g1628 260 Pfam Chlorophyll A-B binding protein 91 252 IPR022796 -
HCH12g1628 260 SUPERFAMILY Chlorophyll a-b binding protein 71 260 - -
HCH12g1628 260 FunFam Chlorophyll a-b binding protein, chloroplastic 78 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1628 HCH-Chr12:43203493 HCH3g0790 HCH-Chr3:5790920 1.70E-50 dispersed
HCH12g1628 HCH-Chr12:43203493 HCH12g1114 HCH-Chr12:8672768 8.70E-47 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1628 K08916 - csv:101218137 458.759