Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1637 GTTGAGAAAGGTCTTGTTGGGTTGGCTCCAATCTTGTGTAAATTCAGCTCCAACAAAATGGTTGCTAGTAAAATATATGTTCCAATGATTGATTATGAGATGTTAGAAAAGGCCACAGATGTTTTCCAGGAAAATAATGTTTTGGGTGAGGGTGGATTTGGATGTGTTTACAAGGCTAAATTGGATAATAACTTACTTGTTGCTGTAAAAAAACTCGAATGTCGAGACAAGGATTCAGAGAGGGAATTCGAGACTGAAGTTGATTTGTTGAGCAAAATTCAACATTCTAATATTATACGCCTATTGGGTTATAGTTTTTATGGCGAATCAAGGCTTCTAGTTTACGAGTTGATGGAGAATGGATCACTGGAGATACAGTTACACAGACTTTCTCATGGTTTGGAATTAACTTGGCACATGAGGATGAAGATTGCTCTTGATGCAACTAGAGGATTAGAATATCTACATGAGCACTGCAAGCCATCAATGATACATAGAGATCTGAAATCATCTAATATTCTTTTGGATACAAAGTTCAATGCCAAGCTTTCGGATTTTGGTTTGTCTGTGATTGTTGGGGCACAAAACAAGAACGATATAAAGCTTTCGAGCACGATGGGTTACGTCGCTCCAGAATATCTTTTAGATG 649 37.44 VEKGLVGLAPILCKFSSNKMVASKIYVPMIDYEMLEKATDVFQENNVLGEGGFGCVYKAKLDNNLLVAVKKLECRDKDSEREFETEVDLLSKIQHSNIIRLLGYSFYGESRLLVYELMENGSLEIQLHRLSHGLELTWHMRMKIALDATRGLEYLHEHCKPSMIHRDLKSSNILLDTKFNAKLSDFGLSVIVGAQNKNDIKLSSTMGYVAPEYLLD 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 43476148 43477307 + evm.model.ptg000002l.22 HCH12g1637 556484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1637 216 PANTHER OS01G0750732 PROTEIN 27 215 IPR050885 -
HCH12g1637 216 SMART serkin_6 42 216 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1637 216 Pfam Protein kinase domain 43 214 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1637 216 Gene3D Phosphorylase Kinase; domain 1 12 117 - -
HCH12g1637 216 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524(InterPro)
HCH12g1637 216 FunFam Protein kinase superfamily protein 9 117 - -
HCH12g1637 216 SUPERFAMILY Protein kinase-like (PK-like) 20 215 IPR011009 -
HCH12g1637 216 Gene3D Transferase(Phosphotransferase) domain 1 118 216 - -
HCH12g1637 216 ProSiteProfiles Protein kinase domain profile. 42 216 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1637 216 FunFam Os07g0541700 protein 118 207 - -
HCH12g1637 216 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0398 HCH-Chr12:2274416 HCH12g1637 HCH-Chr12:43476148 3.60E-77 dispersed
HCH12g1637 HCH-Chr12:43476148 HCH4g1273 HCH-Chr4:8778717 1.50E-68 dispersed
HCH12g1637 HCH-Chr12:43476148 HCH4g0459 HCH-Chr4:2967227 1.50E-108 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81149 PF00069 Pkinase 6.00E-37 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1637 - - - 0.0