Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0002 ATGGAGCACGGTACAGTCGTCCCCAAGGGCATGGATGATAATTCAAATTCCACAGGCTCTTACAGAAACATCATCACTATTGCGGCCATCGCTGCCGGCGTCCAATTCGGTTGGGCTCTCCAGCTATCCTTGTTGACGCCTTACATTCAGCAACTGGGCGTTCCTCATTCTGCAAGCTCTTTCATCTGGCTATGTGGTCCCATCTCAGGCCTACTTGTGCAACCAACGGTGGGGTATTACAGCGATCGTTGCACCTCTAGGTTTGGTCGTCGGTGGCCTTTCATTGTTTCCGGGGCCGGTTTCGTGGCGATTGCAGTTTTCCTCATTGGTTTTGCCGCAAATATTGGGCATTCATTCGGAGACGTGCTTACGAAGCCGATGAAACCAAGGGCGGTGGCTATATTTGTTGTGGGATTTTGGGTGCTGGACGTGGCAAACAACATGTTGCAGGGTCCCTGTAGAGCTTTCCTGGCAGATATATCGGGTGACGACCACAAAAAGATGAAAGTGTCGAATGGACTTTTCTCATTCTTCATGGGTGTAGGGAATGTTTTAGGGTACGCAGCTGGATCTTATAGCAATCTTTATAAGATTCTTCCCTTCACAATGACTCAAGCTTGTGACACTTACTGCGCAAACCTAAAAACATGTTTCATAATTGACATTATCCTCCTACTTTCAATAACCACAACCGCTGTGGTGATGGTGAAAGAAAAGCCATATGAACGAATGGATAATGATGATGAGTCATCGACCTTCTTTGGGCAGCTATCAACAGCATTCAAGCAGTTGTCAAAACCGATGTGGATATTGTTACTTGTGACAGCTTTAAACTGGGTGGGTTGGTTCCCATTCCTCTTGTATGACACTGACTGGATGGGAATGGAAGTGTACGGTGGTAAGCCAAAAGGAACACCAAAAGAAATGGAGTTTTATGAAATTGGTGTTCGTGTTGGGTCGCTCGGGTTGATGTTAAACTCATTTATTCAGGGTTTTTCTGCATTGGGGGTGGAACCAATTAGCCGTATTCTTGGAGGACTCAAGTGGCTGTGGGGAATTGTAAACATTATATTGGCACTTGGAATGGGTGCTACAGTGATTGTGACCAAGGCAGCGGAGCGTTGGAGGGCAGCTAATGGGCTGGTGCTTCCTTCAAACAATGTCAAGGCTGAAGCATTGTCAACTTTTACGGTCTTGGGTATTCCACTCTCGGTGAACTTTAGCGTTCCTTTTGCATTGGCGTCCAACTTTTCTTCCGACTCTGGTGCAGGTCAAGGCTTGTCTTTGGGACTTCTCAACCTCTCCATAGTGGTCCCACAGATGTTCGTTTCGGTAGTAAGTGGGCCGCTGGATGCAGCTATGGGGGGAGGAAACTTACCAGCATTTATAATGGGTGGAATCGCAGCTTTTGTCAGCTCAATCTTCGCCATGTTTGTACTCCCTAATGCACCAGCTCAATCTGCTCCCGTACTAGTAATGGGTGGTGGCCACTGA 1494 47.32 MEHGTVVPKGMDDNSNSTGSYRNIITIAAIAAGVQFGWALQLSLLTPYIQQLGVPHSASSFIWLCGPISGLLVQPTVGYYSDRCTSRFGRRWPFIVSGAGFVAIAVFLIGFAANIGHSFGDVLTKPMKPRAVAIFVVGFWVLDVANNMLQGPCRAFLADISGDDHKKMKVSNGLFSFFMGVGNVLGYAAGSYSNLYKILPFTMTQACDTYCANLKTCFIIDIILLLSITTTAVVMVKEKPYERMDNDDESSTFFGQLSTAFKQLSKPMWILLLVTALNWVGWFPFLLYDTDWMGMEVYGGKPKGTPKEMEFYEIGVRVGSLGLMLNSFIQGFSALGVEPISRILGGLKWLWGIVNIILALGMGATVIVTKAAERWRAANGLVLPSNNVKAEALSTFTVLGIPLSVNFSVPFALASNFSSDSGAGQGLSLGLLNLSIVVPQMFVSVVSGPLDAAMGGGNLPAFIMGGIAAFVSSIFAMFVLPNAPAQSAPVLVMGGGH 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 81253 82921 - evm.model.ptg000021l.2 HCH13g0002 556507

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0002 497 CDD MFS_SLC45_SUC 33 478 - -
HCH13g0002 497 Gene3D MFS general substrate transporter like domains 20 247 IPR036259 -
HCH13g0002 497 NCBIfam sucrose/proton symporter 21 484 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
HCH13g0002 497 PANTHER SUGAR TRANSPORTER 16 479 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
HCH13g0002 497 Pfam MFS/sugar transport protein 36 281 - -
HCH13g0002 497 SUPERFAMILY MFS general substrate transporter 12 484 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0002 K15378 - - csv:116401998 730.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0002 HCH-Chr13:81253 HCH4g0301 HCH-Chr4:1964281 1.50E-135 dispersed
HCH13g0002 HCH-Chr13:81253 HCH13g0003 HCH-Chr13:89508 4.70E-283 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH13g0003 . 22 497 Sucrose Transporter Gene Family AT1G22710 62.9 1.8e-176 615.9
HCH13g0002 . 22 497 Sucrose Transporter Gene Family AT1G22710 62.1 8.2e-174 607.1
HCH4g0301 . 31 495 Sucrose Transporter Gene Family AT1G22710 52.8 6.8e-144 507.7
HCH13g0003 . 22 481 Sucrose Transporter Gene Family AT2G14670 64.5 7.6e-177 617.1
HCH13g0002 . 22 481 Sucrose Transporter Gene Family AT2G14670 63.4 8.7e-173 603.6
HCH4g0301 . 30 495 Sucrose Transporter Gene Family AT2G14670 53.9 8.0e-142 500.7
HCH13g0003 . 22 411 Sucrose Transporter Gene Family AT1G66570 62.8 2.0e-147 519.2
HCH13g0002 . 22 411 Sucrose Transporter Gene Family AT1G66570 61.7 3.5e-144 508.4
HCH4g0301 . 30 423 Sucrose Transporter Gene Family AT1G66570 53.1 2.8e-117 419.1
HCH4g1631 . 163 606 Sucrose Transporter Gene Family AT2G02860 73.1 1.3e-189 659.4
HCH13g0003 . 22 481 Sucrose Transporter Gene Family AT5G06170 62.6 2.3e-165 578.9
HCH13g0002 . 22 481 Sucrose Transporter Gene Family AT5G06170 61.5 2.6e-161 565.5
HCH4g0301 . 30 495 Sucrose Transporter Gene Family AT5G06170 51.1 5.2e-133 471.5
HCH13g0003 . 16 481 Sucrose Transporter Gene Family AT5G43610 63.9 2.5e-175 612.1
HCH13g0002 . 16 481 Sucrose Transporter Gene Family AT5G43610 62.8 2.8e-171 598.6
HCH4g0301 . 30 495 Sucrose Transporter Gene Family AT5G43610 53.3 6.3e-139 491.1
HCH4g0301 . 28 502 Sucrose Transporter Gene Family AT1G09960 71.2 5.6e-199 690.6
HCH13g0003 . 20 487 Sucrose Transporter Gene Family AT1G09960 50.2 1.0e-128 457.2
HCH13g0003 . 22 497 Sucrose Transporter Gene Family AT1G71880 62.1 5.3e-173 604.4
HCH13g0002 . 22 497 Sucrose Transporter Gene Family AT1G71880 61.1 2.7e-169 592.0
HCH4g0301 . 30 506 Sucrose Transporter Gene Family AT1G71880 53.2 2.3e-139 492.7
HCH13g0003 . 22 484 Sucrose Transporter Gene Family AT1G71890 60.7 2.2e-166 582.4
HCH13g0002 . 22 484 Sucrose Transporter Gene Family AT1G71890 60.5 3.1e-165 578.6
HCH13g0003 . 22 497 Sucrose Transporter Gene Family AT1G71880 62.1 5.3e-173 604.4
HCH13g0002 . 22 497 Sucrose Transporter Gene Family AT1G71880 61.1 2.7e-169 592.0
HCH4g0301 . 30 506 Sucrose Transporter Gene Family AT1G71880 53.2 2.3e-139 492.7
HCH13g0003 . 22 497 Sucrose Transporter Gene Family AT1G22710 62.9 1.8e-176 615.9
HCH13g0002 . 22 497 Sucrose Transporter Gene Family AT1G22710 62.1 8.2e-174 607.1
HCH4g0301 . 31 495 Sucrose Transporter Gene Family AT1G22710 52.8 6.8e-144 507.7
HCH4g1631 . 163 606 Sucrose Transporter Gene Family AT2G02860 73.1 1.3e-189 659.4
HCH4g0301 . 28 502 Sucrose Transporter Gene Family AT1G09960 71.2 5.6e-199 690.6
HCH13g0003 . 20 487 Sucrose Transporter Gene Family AT1G09960 50.2 1.0e-128 457.2
HCH13g0003 . 22 484 Sucrose Transporter Gene Family AT1G71890 60.7 2.2e-166 582.4
HCH13g0002 . 22 484 Sucrose Transporter Gene Family AT1G71890 60.5 3.1e-165 578.6
HCH13g0003 . 16 481 Sucrose Transporter Gene Family AT5G43610 63.9 2.5e-175 612.1
HCH13g0002 . 16 481 Sucrose Transporter Gene Family AT5G43610 62.8 2.8e-171 598.6
HCH4g0301 . 30 495 Sucrose Transporter Gene Family AT5G43610 53.3 6.3e-139 491.1
HCH13g0003 . 22 411 Sucrose Transporter Gene Family AT1G66570 62.8 2.0e-147 519.2
HCH13g0002 . 22 411 Sucrose Transporter Gene Family AT1G66570 61.7 3.5e-144 508.4
HCH4g0301 . 30 423 Sucrose Transporter Gene Family AT1G66570 53.1 2.8e-117 419.1
HCH13g0003 . 22 481 Sucrose Transporter Gene Family AT2G14670 64.5 7.6e-177 617.1
HCH13g0002 . 22 481 Sucrose Transporter Gene Family AT2G14670 63.4 8.7e-173 603.6
HCH4g0301 . 30 495 Sucrose Transporter Gene Family AT2G14670 53.9 8.0e-142 500.7
HCH13g0003 . 22 481 Sucrose Transporter Gene Family AT5G06170 62.6 2.3e-165 578.9
HCH13g0002 . 22 481 Sucrose Transporter Gene Family AT5G06170 61.5 2.6e-161 565.5
HCH4g0301 . 30 495 Sucrose Transporter Gene Family AT5G06170 51.1 5.2e-133 471.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002342 4 2 1 7 5 1 2 2 1 1 2 2 3 1 3 2 2 1 1 2 3 2 1 1 2 2 1 1 1 1 60