Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0003 ATGGAGCACGGTACAGTCGTCCCCAAGGGCACGGATGATAATTCAAATTCTGCAGGCTCTTACAGAAACATCATCACTATTGCAGCCATCGCTGCCGGCGTCCAATTCGGTTGGGCTCTCCAGCTATCCTTGTTGACGCCTTACATTCAGCAACTGGGCGTTCCTCATTCTGCAAGCTCTTTCATCTGGCTATGTGGTCCCATCTCAGGCCTACTTGTGCAACCAACGGTGGGGTATTACAGCGATCGTTGCACCTCTAGGTTTGGTCGTCGGCGGCCTTTCATTGTTTCCGGGGCCTGTTTCGTGGCGATTGCAGTTTTCCTCATTGGTTTTGCCGCAGATATTGGGCATTCATTCGGAGACGTGCTTACGAAGCCGATGAAACCAAGGGCGGTGGCTATATTTGTTGTGGGATTTTGGGTGCTGGACGTGGCAAACAACATGTTGCAGGGTCCCTGTAGAGCTTTCCTGGCAGATATATCGGGTGACGACCACAAAAAGATGAAAGTGTCGAATGGACTTTTCTCATTCTTCATGGGTGTAGGGAATGTTTTAGGGTACGCAGCTGGATCTTATAGCAATCTTTATAAGATTCTTCCCTTCACAATGACTCAAGCTTGTGACACTTACTGCGCAAACCTAAAAACATGTTTCATAATTGACATTATCCTCCTACTTTCAATAACCACAACCGCTGTGGTGATGGTGAAAGAAAAGCCATATGAACGAATGGATAATGATGATGAGTCATCGGCCTTCTTTGGGCAGCTATCAACAGCATTCAAGCAGTTGTCAAAACCGATGTGGATATTGTTACTTGTGACAGCTTTAAACTGGGTGGGTTGGTTCCCATTCCTCTTGTATGACACTGACTGGATGGGAATGGAAGTGTACGGTGGTAAGCCAAAAGGAACACCAAAAGAAATGGAGTTTTATGAAATTGGTGTTCGTGTTGGGTCGCTCGGGTTGATGTTAAACTCGTTTATTCAGGGTTTTTCTGCATTGGGGGTGGAACCAATTAGCCGTATTCTTGGAGGACTCAAGTGGCTGTGGGGAATTGTAAACATTATATTGGCACTTGGAATGGGTGCTACAGTGATTGTGACCAAGGCAGCGGAGCGTTGGAGGGCAGCTAATGGGCTGGTGCTTCCTTCAAACAATGTCAAGGCTGGAGCATTGTCAACTTTTGCGGTCTTGGGTATTCCACTCTCGGTGAACTTTAGCGTTCCTTTTGCATTGGCGTCCATCTTTTCTTCCGACTCTGGTGCAGGTCAAGGCTTGTCTTTGGGACTTCTCAACCTCTCCATAGTGGTCCCACAGATGTTCGTTTCGGTAGTAAGTGGGCCGCTGGATGCAGCTCTGGGGGGAGGAAACTTACCAGCATTTATCATGGGTGGAATCGCAGCTTTTGTCAGCTCAATCTTCGCCATGTTTGTACTCCCTAATGCACCAGCTCAATCTGCTCCCGTACTAGTAATGGGTGGTGGCCACTGA 1494 47.79 MEHGTVVPKGTDDNSNSAGSYRNIITIAAIAAGVQFGWALQLSLLTPYIQQLGVPHSASSFIWLCGPISGLLVQPTVGYYSDRCTSRFGRRRPFIVSGACFVAIAVFLIGFAADIGHSFGDVLTKPMKPRAVAIFVVGFWVLDVANNMLQGPCRAFLADISGDDHKKMKVSNGLFSFFMGVGNVLGYAAGSYSNLYKILPFTMTQACDTYCANLKTCFIIDIILLLSITTTAVVMVKEKPYERMDNDDESSAFFGQLSTAFKQLSKPMWILLLVTALNWVGWFPFLLYDTDWMGMEVYGGKPKGTPKEMEFYEIGVRVGSLGLMLNSFIQGFSALGVEPISRILGGLKWLWGIVNIILALGMGATVIVTKAAERWRAANGLVLPSNNVKAGALSTFAVLGIPLSVNFSVPFALASIFSSDSGAGQGLSLGLLNLSIVVPQMFVSVVSGPLDAALGGGNLPAFIMGGIAAFVSSIFAMFVLPNAPAQSAPVLVMGGGH 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 89508 91176 - evm.model.ptg000021l.3 HCH13g0003 556508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0003 497 SUPERFAMILY MFS general substrate transporter 21 484 IPR036259 -
HCH13g0003 497 NCBIfam sucrose/proton symporter 21 484 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
HCH13g0003 497 PANTHER SUGAR TRANSPORTER 18 479 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
HCH13g0003 497 Pfam MFS/sugar transport protein 36 281 - -
HCH13g0003 497 CDD MFS_SLC45_SUC 33 478 - -
HCH13g0003 497 FunFam Sucrose transporter SUC2 22 243 - -
HCH13g0003 497 Gene3D MFS general substrate transporter like domains 20 247 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0003 HCH-Chr13:89508 HCH4g0301 HCH-Chr4:1964281 1.60E-137 dispersed
HCH13g0002 HCH-Chr13:81253 HCH13g0003 HCH-Chr13:89508 4.70E-283 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0003 K15378 - csv:116401998 740.725