Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0060 ATGAGCTCTTCATCAACTCAACTGTGTGCTTCAAGGATGGTCATGTATGAGCCATTCCACCAGATCAACAACTGGGGAAATGCCTTTGATAGTAGACTAGATACTGGTGTTTCACCAATTCTCAAAGTGGATGATTTTATAGACAATAAGCCCGAGTTTTTTCCTCTCGAATCGATGGATAATCTGGAAAGCAGCCAGGAAACAAACAGGCCAACTGATAATAAGGTACAAAGACGTTTGGCGCAAAATCGTGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTCTATGTGCAGCAATTAGAAACGAGCCGTTTGAAGCTATTACAGTTGGAGCAGGAGCTAGAGAGAACGAGGCGGAAGGGTGTATACATGAGCAGTGTGATAGATACCAGTCACTTGGGAATGGGATCATCTGGAATGGTAAACCCAGGGATTGCTGCTTTTGAGATGGAATATGGTCATTGGGTTGATGAACAACAGAGACAGATCTGTGAACTTAGAAAAGCATTGCAAGTTCATGTAACTGATGTAGAACTCCATATTTTAGTGGAGAGTAGCTTAAAACACTACTACAATCTTTTTTCCATGAAAGCAAATGCTGCAAAGGCTGATGTATTCTACTTAATGTCTGGCATGTGGAGAACGTCGGCAGAACGTTTTTTCCTCTGGATCGGAGGATTTCGCCCATCAGAGCTGCTAAATGTTCTCATGCCACATTTTGAGCCCTTAACCGATCAACAAAGAGCGGACATCCGTAATCTACGGCATTCATCTCAGCAAGCTGAAGACGCCCTCTCACAGGGAATGGAAAAACTGCATCAGAATCTAGCCCAGAACATAGCAATTGAGCCTCTGGGTATAGAAAGCTATGCTTCTCAAATGTGTGATGGAGTGGAGAAATTTGAGTCAATGGAGAGCTTTGTGTGCCAGCCGAGTGTGTGTTACTCTTTTCTGGAACAGGCAGACCATCTGAGAAAACAAACACTGACGAGGATGTCTCACATCCTAACCACCAAGCAAGCAGCGCACGGGTTGCTCGCTTTAGGCGAGTACTTTCACCGTCTTCGAGCTCTCAGTTCTCTTTGGGCCGCTCGTCCTCATGAACCTGCCTAG 1116 44.89 MSSSSTQLCASRMVMYEPFHQINNWGNAFDSRLDTGVSPILKVDDFIDNKPEFFPLESMDNLESSQETNRPTDNKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLLQLEQELERTRRKGVYMSSVIDTSHLGMGSSGMVNPGIAAFEMEYGHWVDEQQRQICELRKALQVHVTDVELHILVESSLKHYYNLFSMKANAAKADVFYLMSGMWRTSAERFFLWIGGFRPSELLNVLMPHFEPLTDQQRADIRNLRHSSQQAEDALSQGMEKLHQNLAQNIAIEPLGIESYASQMCDGVEKFESMESFVCQPSVCYSFLEQADHLRKQTLTRMSHILTTKQAAHGLLALGEYFHRLRALSSLWAARPHEPA 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 354454 357631 - evm.model.ptg000021l.60 HCH13g0060 556565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0060 371 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 73 117 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g0060 371 SMART brlzneu 71 134 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g0060 371 PANTHER TRANSCRIPTION FACTOR TGA9 1 370 - -
HCH13g0060 371 FunFam BZIP family transcription factor 74 123 - -
HCH13g0060 371 Gene3D - 74 126 - -
HCH13g0060 371 MobiDBLite consensus disorder prediction 59 90 - -
HCH13g0060 371 Coils Coil 94 121 - -
HCH13g0060 371 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 78 93 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g0060 371 Pfam Seed dormancy control 163 238 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
HCH13g0060 371 ProSiteProfiles DOG1 domain profile. 146 366 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
HCH13g0060 371 SUPERFAMILY Leucine zipper domain 75 115 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g0060 371 MobiDBLite consensus disorder prediction 72 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0060 HCH-Chr13:354454 HCH4g0180 HCH-Chr4:1035219 4.70E-78 dispersed
HCH13g0060 HCH-Chr13:354454 HCH13g1272 HCH-Chr13:40631032 6.70E-101 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32764 PF14144 DOG1 6.00E-29 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0060 K14431 - csv:101217648 565.459