Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH13g0060 | ATGAGCTCTTCATCAACTCAACTGTGTGCTTCAAGGATGGTCATGTATGAGCCATTCCACCAGATCAACAACTGGGGAAATGCCTTTGATAGTAGACTAGATACTGGTGTTTCACCAATTCTCAAAGTGGATGATTTTATAGACAATAAGCCCGAGTTTTTTCCTCTCGAATCGATGGATAATCTGGAAAGCAGCCAGGAAACAAACAGGCCAACTGATAATAAGGTACAAAGACGTTTGGCGCAAAATCGTGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTCTATGTGCAGCAATTAGAAACGAGCCGTTTGAAGCTATTACAGTTGGAGCAGGAGCTAGAGAGAACGAGGCGGAAGGGTGTATACATGAGCAGTGTGATAGATACCAGTCACTTGGGAATGGGATCATCTGGAATGGTAAACCCAGGGATTGCTGCTTTTGAGATGGAATATGGTCATTGGGTTGATGAACAACAGAGACAGATCTGTGAACTTAGAAAAGCATTGCAAGTTCATGTAACTGATGTAGAACTCCATATTTTAGTGGAGAGTAGCTTAAAACACTACTACAATCTTTTTTCCATGAAAGCAAATGCTGCAAAGGCTGATGTATTCTACTTAATGTCTGGCATGTGGAGAACGTCGGCAGAACGTTTTTTCCTCTGGATCGGAGGATTTCGCCCATCAGAGCTGCTAAATGTTCTCATGCCACATTTTGAGCCCTTAACCGATCAACAAAGAGCGGACATCCGTAATCTACGGCATTCATCTCAGCAAGCTGAAGACGCCCTCTCACAGGGAATGGAAAAACTGCATCAGAATCTAGCCCAGAACATAGCAATTGAGCCTCTGGGTATAGAAAGCTATGCTTCTCAAATGTGTGATGGAGTGGAGAAATTTGAGTCAATGGAGAGCTTTGTGTGCCAGCCGAGTGTGTGTTACTCTTTTCTGGAACAGGCAGACCATCTGAGAAAACAAACACTGACGAGGATGTCTCACATCCTAACCACCAAGCAAGCAGCGCACGGGTTGCTCGCTTTAGGCGAGTACTTTCACCGTCTTCGAGCTCTCAGTTCTCTTTGGGCCGCTCGTCCTCATGAACCTGCCTAG | 1116 | 44.89 | MSSSSTQLCASRMVMYEPFHQINNWGNAFDSRLDTGVSPILKVDDFIDNKPEFFPLESMDNLESSQETNRPTDNKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLLQLEQELERTRRKGVYMSSVIDTSHLGMGSSGMVNPGIAAFEMEYGHWVDEQQRQICELRKALQVHVTDVELHILVESSLKHYYNLFSMKANAAKADVFYLMSGMWRTSAERFFLWIGGFRPSELLNVLMPHFEPLTDQQRADIRNLRHSSQQAEDALSQGMEKLHQNLAQNIAIEPLGIESYASQMCDGVEKFESMESFVCQPSVCYSFLEQADHLRKQTLTRMSHILTTKQAAHGLLALGEYFHRLRALSSLWAARPHEPA | 371 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 354454 | 357631 | - | evm.model.ptg000021l.60 | HCH13g0060 | 556565 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH13g0060 | 371 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 73 | 117 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH13g0060 | 371 | SMART | brlzneu | 71 | 134 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH13g0060 | 371 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 1 | 370 | - | - | |
HCH13g0060 | 371 | FunFam | BZIP family transcription factor | 74 | 123 | - | - | |
HCH13g0060 | 371 | Gene3D | - | 74 | 126 | - | - | |
HCH13g0060 | 371 | MobiDBLite | consensus disorder prediction | 59 | 90 | - | - | |
HCH13g0060 | 371 | Coils | Coil | 94 | 121 | - | - | |
HCH13g0060 | 371 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 78 | 93 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH13g0060 | 371 | Pfam | Seed dormancy control | 163 | 238 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
HCH13g0060 | 371 | ProSiteProfiles | DOG1 domain profile. | 146 | 366 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
HCH13g0060 | 371 | SUPERFAMILY | Leucine zipper domain | 75 | 115 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH13g0060 | 371 | MobiDBLite | consensus disorder prediction | 72 | 87 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g0060 | HCH-Chr13:354454 | HCH4g0180 | HCH-Chr4:1035219 | 4.70E-78 | dispersed | |
HCH13g0060 | HCH-Chr13:354454 | HCH13g1272 | HCH-Chr13:40631032 | 6.70E-101 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32764 | PF14144 | DOG1 | 6.00E-29 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH13g0060 | K14431 | - | csv:101217648 | 565.459 |