Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0076 ATGGGTTCTTTGCCTTCTGAGAATTTTGCTCTTGAAATGGTAGAAAACAACCATCTTCACGTTGGCGATCAAAGCATTTCTGCTGCTGCTGCTGCAGAGACATCTCATTCTCATTTGCTGCTTAATTCTCCAGACCCTCCAAAACCATGGCAGCAGATTATCACTGCAATCAAAGAGAATGTTATTCCTCAAAGTTGGAAGAAGAAGAAGAAAATGATGATAAAGAAGAACAAAAACAAGTCTTCAAGCTCTGAAAAAGAAACTGTTTTTAAAGCCATACTTTCTCTCCTGCAAGGACTGTTTCCAATACTTGGCTTAGGCAGAAACTACAAAGCTTCAAAGTTCAAAAAGGATTTGATGGCTGGTTTGACACTTGCTAGTCTTAGCATTCCTCAGAGTATAGGGTATGCTAATTTGGCAAAACTGGATCCTCAGTATGGTTTGTACACAAGTGCTGTCCCTCCTCTGATATATGCATTAATGGGAAGTTCAAGAGAGATAGCAATAGGACCAGTGGCTGTAGTTTCCTTGCTTTTGTCTTCTCTGCTTCAAGAAATACAAGATCCTGTGGCTGATCCAATTGCTTATAGAAAGCTTGTTTTCACTGTCACCTTCTTTGCTGGAACTTTCCAAGCTGCATTTGGACTCTTGAGGTTGGGTTTTCTAGTGGATTTTCTTTCACATGCTGCCATAGTTGGGTTCATGGCTGGTGCAGCCATTCTCATTGGTCTTCAACAAATGAAAGGCTTGCTTGCTATCACTAACTTCACTACAAAAACTGATATAGTCTCTGTCTTGGAATCTATTGTAAAATCAGTTCATCAGCCTTGGTACCCTCTTAACATAGTCCTTGGTTGCTCATTCCTCATTTTCCTCCTTCTAGCCAGGTTCATTGGCAGAAGGAACAAAAGACTTTTCTGGCTGTCAGCAATTGCTCCCCTCATATCAGTGGTTCTGTCAACTTTGATAGTGTTTATGTCAAGAGCTGACAGACATGGAGTTAAGATTGTAAAACATGTCAAAAGAGGTTTAAATCCAATCTCCATTAATCAACTTCAATTTAACTCTCCATATCATGGAAAAGCTGCCAAAGTTGGCCTCATTGCTGCCCTTATAGCCCTCACTGAAGCCATAGCTGTTGGCAGATCTTTTGCTGCCATTAAAGGCTACAATATTGATGGCAACAAGGAAATGATAGCCATAGGTTTCACTAATATAATTGGCTCTTTAACTTCTTGTTACGTTGCAACGGGCTCATTCTCTAGAACTGCAGTGAATTTTAGTGCTGGATGTGAGACAGTGATATCAAATGTAGTGATGGCAGTAACAGTAATGCTGGCCCTTGAATTCTTCACTAGATTCCTCTATTTCACTCCCATGGCCATTCTGGCTTCAATCATTCTCTCTGCTCTTCCTGGACTTATTGACATTAATGAAGCTTGCCACATCTGGAAAGTTGACAAACTAGACTTCCTCGCTTGCCTCGGTGCCTTTCTCGGTGTCTTGTTTTGTTCAGTAGAAATGGGCCTTCTTGTCGCGGTTGGAATATCATTTGCAAAGATACTATTCTTATCAATCAGACCAGCCACAGAAGTGGTAGGAAGACTTCCAAGAACTGACATATTTTGCAATATGGAGCAATTCCCAATGGCCATCAAAATCCATGGAATCTCCATAATCAGAATCAACTCAGGCTTCCTTTGTTTTGCCAATGCTAATTTCATCAGAGAAAGAATTATGAAATGGGTAGAAGAAGACGAGGATGAAGATGATGTTGAAGAAACAACCAGAGAGAAATTCAAACAAGTAGTTCTCGATATGTCCAATGTAATGAACATGGACACTTCTGGAATCATTGCTTTGGAAGATCTTCATAGAAAGTTAACGTTGCATGGCATACAATTGAGTATAGCGAGTCCGAAATGGGAAGTATTCCACAAATTAAAGCAAACTAAATATTTGGAAAGAATTGAAAGAAGGGTTTTTGTATCAGTTGGTGAAGCAGTGGATGCATGCCTTGCAAATGCATCCAAAATGCCTACTCTTACCAAAGTTATTGTCCATTGA 2067 40.06 MGSLPSENFALEMVENNHLHVGDQSISAAAAAETSHSHLLLNSPDPPKPWQQIITAIKENVIPQSWKKKKKMMIKKNKNKSSSSEKETVFKAILSLLQGLFPILGLGRNYKASKFKKDLMAGLTLASLSIPQSIGYANLAKLDPQYGLYTSAVPPLIYALMGSSREIAIGPVAVVSLLLSSLLQEIQDPVADPIAYRKLVFTVTFFAGTFQAAFGLLRLGFLVDFLSHAAIVGFMAGAAILIGLQQMKGLLAITNFTTKTDIVSVLESIVKSVHQPWYPLNIVLGCSFLIFLLLARFIGRRNKRLFWLSAIAPLISVVLSTLIVFMSRADRHGVKIVKHVKRGLNPISINQLQFNSPYHGKAAKVGLIAALIALTEAIAVGRSFAAIKGYNIDGNKEMIAIGFTNIIGSLTSCYVATGSFSRTAVNFSAGCETVISNVVMAVTVMLALEFFTRFLYFTPMAILASIILSALPGLIDINEACHIWKVDKLDFLACLGAFLGVLFCSVEMGLLVAVGISFAKILFLSIRPATEVVGRLPRTDIFCNMEQFPMAIKIHGISIIRINSGFLCFANANFIRERIMKWVEEDEDEDDVEETTREKFKQVVLDMSNVMNMDTSGIIALEDLHRKLTLHGIQLSIASPKWEVFHKLKQTKYLERIERRVFVSVGEAVDACLANASKMPTLTKVIVH 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 443930 448482 - evm.model.ptg000021l.76 HCH13g0076 556581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0076 688 ProSiteProfiles STAS domain profile. 564 672 IPR002645 -
HCH13g0076 688 Gene3D STAS domain 527 675 IPR036513 -
HCH13g0076 688 PANTHER SULFATE TRANSPORTER 82 674 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0076 688 FunFam Sulfate transporter 31 527 675 - -
HCH13g0076 688 Pfam Sulfate permease family 115 495 IPR011547 GO:0016020(InterPro)
HCH13g0076 688 Pfam STAS domain 550 668 IPR002645 -
HCH13g0076 688 SUPERFAMILY SpoIIaa-like 554 672 IPR036513 -
HCH13g0076 688 NCBIfam sulfate permease 102 667 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0076 688 CDD STAS_SulP_like_sulfate_transporter 548 662 - -
HCH13g0076 688 ProSitePatterns SLC26A transporters signature. 144 165 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0076 HCH-Chr13:443930 HCH4g1880 HCH-Chr4:50423243 1.40E-165 dispersed
HCH13g0076 HCH-Chr13:443930 HCH13g0077 HCH-Chr13:463865 1.60E-172 tandem
HCH13g1260 HCH-Chr13:40494724 HCH13g0076 HCH-Chr13:443930 3.90E-232 transposed
HCH14g0099 HCH-Chr14:18977335 HCH13g0076 HCH-Chr13:443930 9.30E-191 transposed
HCH12g0771 HCH-Chr12:4957419 HCH13g0076 HCH-Chr13:443930 1.90E-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0076 K17469 - csv:101211892 963.755