Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0077 ATGGATTCAAGGGGTGATTCAAATGGTAGAGAGCTTGAAACTAAAGAAATGGACGTTAGAAGTCTTTCGTCTTCACACAACAATACACAATACATTCACAAGGTTGGAGTTCCACCAAAGCAAAATCTTTTCAAAGAATTTAAATCCAGAGTGAAAGAAACTTTCTTTGCAGATGATCCTCTACGTTCCTTCAAGGATCAATCGAAGTCCCGAAAGTTAGTCCTGGGAATTCAGGCTATTTTCCCGATATTCGAGTGGGGGAGGAATTACAATCTGACTAAATTTAGAGGGGATTTGATTGCTGGATTCACTATTGCAAGTTTGTGCATTCCACAGGACATAGCATATGCAAAGCTTGCTAATTTACCTCCACAGTATGGATTGTATTCCAGTTTTGTTCCACCATTGGTTTATGCTATGATGGGTAGCTCAAGGGACATAGCTATAGGGCCAGTGGCTGTTGTTTCTCTCTTACTGGGAACACTGCTTCAAAGTGAGATTGATCACAATAAACATCCAGAAGAGTATCTGCGGCTTGCATTTACGGCTACGTTTTTCGCAGGGATCACCCAAGCCTCCCTAGGGACGCTGAGGTTGGGATTCCTGATTGACTTTCTATCTCATGCTGCTATTGTTGGTTTTATGGGTGGAGCTGCCATCACTATCGCCCTTCAACAGCTTAAAGGTTTTCTTGGCATTAAAACATCATTATTCACAACGAAAACGGATATTATCTCTGTAATGCGCTCAGTATTTGCTACAGCCCATCATGGATGGAACTGGCAGACTATAGTTATTGGAGTGACTTTCTTAAGTTTTCTTCTATTTGCTAAATTCATTGGAAAGAAGAATAGGAGCCTTTTTTGGGTGCCTGCAATTGCGCCATTAATATCAGTTATTCTATCCACCTTTTTTGTTTACATTACTCGTGCAGACAAGAGAGGGGTTGCAATTGTGAGATACATAGAGAAAGGAATCAATCCCCCATCAGTGAATCAAATTTATTTCACTGGTGAATACCTCCTTAAAGGGTTCAGGATCGGTGTGGTGGCTGGTATGATAGCGTTAACAGAAGCCACAGCAATTGGGAGAACATTTGCATCCATGAAGGATTACCAACTTGATGGTAACAAAGAGATGGTGGCACTAGGAGCAATGAATGTTGTCGGTTCAATGACTTCCTGCTATGTGGCAACAGGCTCGTTTTCTCGATCAGCGGTGAATTACATGTCTGGCTGCCAAACTGCAGTCTCAAACATTGTTATGTCCGTTGTTGTACTTCTAACTCTGAAGTTCATCACTCCCCTTTTCAAGTACACTCCAAATGCTATTCTTTCTGCCATCATCATCTCTGCTGTGATCAGCTTGATTGACATTCAGGCAGCAATTTTAATTTGGAAGATTGATAAATTCGATTTTGTTGCTTGCATTGGAGCCTTCTTTGGCGTTATTTTTCATGATGTTGAGACGGGCCTCCTAATTGCTGTCTGTATATCATTTGCTAAGATACTATTACAAGTAACCAGGCCAAGGATTGCAGTACTGGGGAGGATCCCTAGGACAACAGTATACAGAAACACCCAACAATATCCAGAAGCAACAAAAGTGCCCGGGGTTCTAATTGTCAGAGTCGATTCTGCGATTTACTTTTCCAATTCCAACTACACGAAAGAGAGGATACTGAGATGGTTGACAGATGAGGAAGAACAAATAAAGAAGGCTTATTCGCCAAAAATTCAGTTTTTGATTGCCGAGATGTCTCCTGTAACTGACATTGACACTAGTGGTATTCATGCCTTAGAAGAGCTTCACAAGAGTCTCCAGAAAAGAGATGTTCAGCTTATTCTCGCAAATCCCGGGCCAGTAGTGATCGCCAAACTCCACGCATCCAAATTTGCGGATTTGATTGGTGAGGACCATATCTTTCTGACGGTAGCCGAAGCTGTTTCATCCTGCTCTGCAAAGTTGGTGGAAGAGGCTTAG 1983 41.91 MDSRGDSNGRELETKEMDVRSLSSSHNNTQYIHKVGVPPKQNLFKEFKSRVKETFFADDPLRSFKDQSKSRKLVLGIQAIFPIFEWGRNYNLTKFRGDLIAGFTIASLCIPQDIAYAKLANLPPQYGLYSSFVPPLVYAMMGSSRDIAIGPVAVVSLLLGTLLQSEIDHNKHPEEYLRLAFTATFFAGITQASLGTLRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKTSLFTTKTDIISVMRSVFATAHHGWNWQTIVIGVTFLSFLLFAKFIGKKNRSLFWVPAIAPLISVILSTFFVYITRADKRGVAIVRYIEKGINPPSVNQIYFTGEYLLKGFRIGVVAGMIALTEATAIGRTFASMKDYQLDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNYMSGCQTAVSNIVMSVVVLLTLKFITPLFKYTPNAILSAIIISAVISLIDIQAAILIWKIDKFDFVACIGAFFGVIFHDVETGLLIAVCISFAKILLQVTRPRIAVLGRIPRTTVYRNTQQYPEATKVPGVLIVRVDSAIYFSNSNYTKERILRWLTDEEEQIKKAYSPKIQFLIAEMSPVTDIDTSGIHALEELHKSLQKRDVQLILANPGPVVIAKLHASKFADLIGEDHIFLTVAEAVSSCSAKLVEEA 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 463865 467681 + evm.model.ptg000021l.77 HCH13g0077 556582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0077 660 SUPERFAMILY SpoIIaa-like 531 652 IPR036513 -
HCH13g0077 660 Pfam STAS domain 530 648 IPR002645 -
HCH13g0077 660 ProSitePatterns SLC26A transporters signature. 124 145 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
HCH13g0077 660 Gene3D STAS domain 509 656 IPR036513 -
HCH13g0077 660 MobiDBLite consensus disorder prediction 1 24 - -
HCH13g0077 660 CDD STAS_SulP_like_sulfate_transporter 530 645 - -
HCH13g0077 660 PANTHER SULFATE TRANSPORTER 50 653 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0077 660 MobiDBLite consensus disorder prediction 1 20 - -
HCH13g0077 660 Pfam Sulfate permease family 95 477 IPR011547 GO:0016020(InterPro)
HCH13g0077 660 NCBIfam sulfate permease 82 648 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0077 660 ProSiteProfiles STAS domain profile. 529 652 IPR002645 -
HCH13g0077 660 FunFam Sulfate transporter 31 509 655 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0771 HCH-Chr12:4957419 HCH13g0077 HCH-Chr13:463865 1.20E-299 dispersed
HCH13g0077 HCH-Chr13:463865 HCH4g1880 HCH-Chr4:50423243 2.80E-259 dispersed
HCH13g0076 HCH-Chr13:443930 HCH13g0077 HCH-Chr13:463865 1.60E-172 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0077 K17470 - csv:101212138 1114.37