Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH13g0084 | ATGGGTTCTATAGACGTCGATTCTACGAATTCGGAGAACGGATCTGTCTCTGTCATCGTTGCTCTTACCAATCCTTCGTCATCTCTTGATCCTTCTTACACAACTCCTCCTGATAAACCTAAAGACTCATCTCCTCCTCCGCCGCCGCCTCCGTCGTTGACGATTAAGAAACGTTTATCTAATATGCTTCCTCTCGATGTCGGAACTCGCGTTATGTGTCGTTGGAGAGATGGAAAATATCATCCTGTTAAGGTTATTGAACGTCGGAAGTTGCATATTACTGGTCCTAGTGATTACGAATATTATGTTCATTATACTGAGTTTAATAGGAGACTTGATGAGTGGGTGAAGCTTGATCAACTTGACCTTGAGTCAGTTGAGACTGTTGTTGATGAGAAAGTGGAGGATAAGGTTACAGGATTGAAAATGACACGACATCAGAAGCGGAAGATTGATGAAACTCATGTTGAGGGTCATGAAGAACTCGATGCTGCCAGCTTACGAGAGCATGAAGAATTTACCAAAGTGAAAAATATAGCAACAATAGAACTCGGAAGATATGAGATTGAGACATGGTATTTCTCCCCCTTTCCACCAGAATACAATGACACTACAAAGCTTTATTTTTGTGAGTTTTGTCTCAATTTCATGAAGCGCAAAGAACAGCTCCAGAGACATATGAGGAAGTGTGATCTGAAGCATCCTCCTGGTGATGAAATATATCGATGCGGTACTTTGTCCATGTTTGAGGTTGATGGAAAAAAGAACAAGGTTTATGGACAGAATCTCTGTTACTTGGCAAAGTTGTTTCTGGATCACAAGACTCTATATTATGATGTTGACCTTTTTCTATTTTACGTTCTGTGTGAGTGTGATGATCGAGGATGTCACATGGTTGGGTATTTTTCGAAGGAAAAGCATTCAGAGGAATCTTATAATTTGGCATGCATTCTCACCCTTCCTCCTTATCAAAGGAAGGGATATGGCAAGTTCTTAATTGCTTTTTCCTATGAACTTTCCAAGAAAGAAGGTAAAGTCGGCACACCTGAAAGGCCTCTTTCTGACCTTGGGTTGGTGAGCTACAGAGGATACTGGACCAGAGTTCTTTTAGACATCTTGAAAAAGCACAAGGGCAATATATCTATCAAGGAGCTAAGTGACATGACAGCTATAAAAGCCGAAGATATCCTAAACACACTTCAGAGCTTAGAGTTGATTCAATACCGAAAAGGACAGCATGTTATATGTGCTGACCCGAAGGTGCTGGATCGTCATCTTAAAGCCGCTGGTCGTGGGGGTCTGGAGGTCGATGTCAGCAAATTGATCTGGACTCCATATAGAGAACAGGGTTAA | 1353 | 41.54 | MGSIDVDSTNSENGSVSVIVALTNPSSSLDPSYTTPPDKPKDSSPPPPPPPSLTIKKRLSNMLPLDVGTRVMCRWRDGKYHPVKVIERRKLHITGPSDYEYYVHYTEFNRRLDEWVKLDQLDLESVETVVDEKVEDKVTGLKMTRHQKRKIDETHVEGHEELDAASLREHEEFTKVKNIATIELGRYEIETWYFSPFPPEYNDTTKLYFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRCGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEESYNLACILTLPPYQRKGYGKFLIAFSYELSKKEGKVGTPERPLSDLGLVSYRGYWTRVLLDILKKHKGNISIKELSDMTAIKAEDILNTLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLEVDVSKLIWTPYREQG | 450 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 519555 | 523247 | - | evm.model.ptg000021l.84 | HCH13g0084 | 556589 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH13g0084 | 450 | FunFam | Histone acetyltransferase | 233 | 360 | - | - | |
| HCH13g0084 | 450 | Pfam | MYST family zinc finger domain | 176 | 230 | IPR040706 | - | |
| HCH13g0084 | 450 | Gene3D | - | 175 | 231 | - | - | |
| HCH13g0084 | 450 | FunFam | Histone acetyltransferase | 173 | 230 | - | - | |
| HCH13g0084 | 450 | CDD | CBD_MOF_like | 68 | 137 | - | - | |
| HCH13g0084 | 450 | FunFam | Histone acetyltransferase | 353 | 432 | - | - | |
| HCH13g0084 | 450 | PANTHER | HISTONE ACETYLTRANSFERASE | 42 | 446 | IPR050603 | GO:0000790(PANTHER)|GO:0003712(PANTHER)|GO:0045892(PANTHER)|GO:0045944(PANTHER) | |
| HCH13g0084 | 450 | Pfam | MOZ/SAS family | 235 | 412 | IPR002717 | GO:0004402(InterPro)|GO:0006355(InterPro) | |
| HCH13g0084 | 450 | SUPERFAMILY | Chromo domain-like | 58 | 175 | IPR016197 | - | |
| HCH13g0084 | 450 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 175 | 446 | IPR016181 | - | |
| HCH13g0084 | 450 | Gene3D | - | 353 | 433 | IPR036388 | - | |
| HCH13g0084 | 450 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - | |
| HCH13g0084 | 450 | Gene3D | - | 56 | 174 | - | - | |
| HCH13g0084 | 450 | MobiDBLite | consensus disorder prediction | 38 | 54 | - | - | |
| HCH13g0084 | 450 | Pfam | RNA binding activity-knot of a chromodomain | 65 | 123 | IPR025995 | - | |
| HCH13g0084 | 450 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| HCH13g0084 | 450 | ProSiteProfiles | MYST-type histone acetyltransferase (HAT) domain profile. | 174 | 445 | IPR002717 | GO:0004402(InterPro)|GO:0006355(InterPro) | |
| HCH13g0084 | 450 | SMART | chromo_7 | 79 | 138 | IPR000953 | - | |
| HCH13g0084 | 450 | Gene3D | - | 233 | 445 | - | - | |
| HCH13g0084 | 450 | CDD | NAT_SF | 286 | 344 | - | - | |
| HCH13g0084 | 450 | FunFam | Histone acetyltransferase | 55 | 174 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH13g0084 | K11308 | - | csv:101217824 | 810.061 |