Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0088 ATGCATCACTTTTCTCAAATTTTCTCTCCTAAAAACAAAAAACCAAAACCGCCAATGGATCCAGGGAAAAACCCTAGAAAACCTAAACTTGGTCGTGTTAATGCTGCTAAAAACATCGATTACGAAGCTTCTCCTTCCACTTCTTCTTCTCTTGATGACTTCTCTCGCTCCTCCGCTCATTCCATGGACTTATCCAACAAATCCAGTTTCCGAATCGATGGATTAAACGAAGAATTTGATCGCTTTTGTGAAAGTTGGGGGTTTAATGGTCCTGATGATTTTGCAATTTCTACTGCAGATTGGGAAGCTAGAAAGGTTAGGTCTTCGTCGGATCTTTTGCCGAGACCCACGTCGCTTTTTTCCGATAGTCCCAAAGTGGAGGAAGTTAAGGTGGAGGAAGTTAAGGTGAAGGAGGACAGGGAAGTGGTGGTGGAGGAGGAATTGCCTAAGAGGGTAATGGATAGTGTTAGGATTAGTGATGAGTTACAGACATTCAGAAGTGGGGGAGCAGAGAGAAGTGGGATTAATGGTGTTAGGCCTCCGGTACTCAAGCCACCGCCGTCGATGAGGCTTCCGGTTTTCGATAATGATCGTTCGACTTGGGACATTTTAAAGGCATTTGCTCCACAAGAGGATGAGGAGGAAGATGTGAAGGGAGGTGGAGAAGTAGAAGGAGAAAGGAATGAACCATTGGTCGAGGGAATTGGAGAGTCGAATTGGGGTTCTTTTACGACTTCGAATGATGATGATTCTTCGAGTAGTACCACTGAGCCTGCTATTTCACCAAATATGAGATCTAGACCCGTTATTACTTCGTGGGTAACGGGTAAACGTCTTGGGCGCGGTTCGTTTGGAACAGTATATGAAGGCATTGCAGAGGATGGGACGTTTTTTGCACTTAAGGAAGTTTCACTGCTTGATCAAGACAGTCAGGGAAGGCAAAGTATTCATCAACTTGAGCAGGAGATTGCTCTTCTAAGTGAGTTCCAGCATGAGAATATAGTTCAGTACTACGGTACACATTCGGATGGCTCAAAACTCTATATCTTCCTTGAGCTTGTATCTCAAGGTTCCCTTATGAGTCTGTATCAGAGGTTTCATCTTTTAGACTCCCATGTTTCTGCATATACAAGACAGATTCTGTGTGGCTTAAAATATCTTCACGATCAAGATGTAGTTCACAGGGATATCAAATGTGGTAATATATTGGTGGATGTGAATGGATCGGTGAAGCTTGCAGATTTTGGTTTGGCAAAGGCAACAAAATTGAATGATGTTAAATCTTGTAAGGGAACTGCGTTCTGGATGGCACCTGAGGTGGTTAATGGGAAGGGTCAAGGATATGGTCTTCCGGCTGATATATGGAGCCTTGGGTGTACAGTATTAGAGATGTTGACTCACAAACTTCCATACTCTGAAGTGGAAAACCCTATGCAGGCACTATTTAGGATTGGAAAGGGTATACCTCCAGCTGTTCCCGATTTTCTCTCAAAGGATGCAAGGGATTTTATTTTACAGTGCTTAAAAGTTAATCCCAATGACCGTCCTACTGCTGCTAGTCTTATATGTCATCCATTTGTGAAGAGACCATTTTCCAGTTTATCAGGGTCAGCATCTCCTTTCAGGCCAGTCAGAAGCATTTAA 1644 43.25 MHHFSQIFSPKNKKPKPPMDPGKNPRKPKLGRVNAAKNIDYEASPSTSSSLDDFSRSSAHSMDLSNKSSFRIDGLNEEFDRFCESWGFNGPDDFAISTADWEARKVRSSSDLLPRPTSLFSDSPKVEEVKVEEVKVKEDREVVVEEELPKRVMDSVRISDELQTFRSGGAERSGINGVRPPVLKPPPSMRLPVFDNDRSTWDILKAFAPQEDEEEDVKGGGEVEGERNEPLVEGIGESNWGSFTTSNDDDSSSSTTEPAISPNMRSRPVITSWVTGKRLGRGSFGTVYEGIAEDGTFFALKEVSLLDQDSQGRQSIHQLEQEIALLSEFQHENIVQYYGTHSDGSKLYIFLELVSQGSLMSLYQRFHLLDSHVSAYTRQILCGLKYLHDQDVVHRDIKCGNILVDVNGSVKLADFGLAKATKLNDVKSCKGTAFWMAPEVVNGKGQGYGLPADIWSLGCTVLEMLTHKLPYSEVENPMQALFRIGKGIPPAVPDFLSKDARDFILQCLKVNPNDRPTAASLICHPFVKRPFSSLSGSASPFRPVRSI 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 549176 553081 + evm.model.ptg000021l.88 HCH13g0088 556593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0088 547 Pfam Protein kinase domain 275 527 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0088 547 MobiDBLite consensus disorder prediction 1 67 - -
HCH13g0088 547 ProSiteProfiles Protein kinase domain profile. 273 527 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0088 547 MobiDBLite consensus disorder prediction 238 266 - -
HCH13g0088 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 392 404 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0088 547 ProSitePatterns Protein kinases ATP-binding region signature. 279 301 IPR017441 GO:0005524(InterPro)
HCH13g0088 547 Gene3D Transferase(Phosphotransferase) domain 1 271 539 - -
HCH13g0088 547 SMART serkin_6 273 527 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0088 547 MobiDBLite consensus disorder prediction 163 189 - -
HCH13g0088 547 FunFam Mitogen-activated protein kinase 1, putative, expressed 271 539 - -
HCH13g0088 547 SUPERFAMILY Protein kinase-like (PK-like) 272 533 IPR011009 -
HCH13g0088 547 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 81 529 IPR050538 -
HCH13g0088 547 MobiDBLite consensus disorder prediction 40 67 - -
HCH13g0088 547 MobiDBLite consensus disorder prediction 210 231 - -
HCH13g0088 547 MobiDBLite consensus disorder prediction 210 266 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0088 HCH-Chr13:549176 HCH14g0125 HCH-Chr14:22616578 3.80E-60 dispersed
HCH13g0088 HCH-Chr13:549176 HCH5g0821 HCH-Chr5:6454165 7.90E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81150 PF00069 Pkinase 4.10E-67 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0088 K13414 - csv:101218538 688.337