Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0103 ATGGCTTCTACAATGGCTAAAACAAGAATACAGAGGAAGCCCATCAAACAAAGCCATGAAAACCAGAAACCAAAGCAGCAGAAGGCAGAGAAGCCACCATCTTGGGCAGTGGTTGTAGGAATATTGAGTTGCAAGTACCTTCAGCCCCAACCGCAACCGCAGCAGCACCGCCAATTGCCACGCAAAGAGAAGCAAAAAGAGCAAGCTGCAGAAGAGAGCAGCAAGAACTGTAAGAAAATGAGGTGTTCTGGTTCACTTTGTAGCAACACCAAGGTAACACAGAGGCCTGAAACCGTATTGCCGCCGGAAGTTCACAAGAAAAGGGCATTAACTTCAATGGTTTCCAGAAACAATGACTCTTCAAGTTCAAGTAGATGCATCAAAGCTCCTCATTTGAACGAACATAATGGTGTTTTATCAGCTACCTCTTCCTCTTTATCCGCATCATCTTCTTCCAATTCCTCCAATGGTGGTTCTTTTAGGGGAATGCCTTTCAGGAGGTTCTATGGCTGTTACGAGTGTAAAATGGTGATTGACCCTGTTCTTGGAATCAATAGAGATCCTTCTCTGCGAGCAACCATTTGTCCTTGTCCTGAATGTGGTGAGATTTTCATGAAAGCTGAAACTTTGGAGCTTCACCAGAGTGTAAGGCATGCAGTAACTGAACTTGGTCCTGAAGATACAAGCAAGAACATAGTGGAGATCATATTCCAGTCAAGCTGGCTTAAAAAACAAACCCCGATTTGCAAAATCGAACGGATTCTCAAAGTTCAGAACACTCCCAAAACCATCTCCAACTTTGAAGAATACAGAGACTCCATTAAAGCCAAAGCCAACAAGCTCCCTAAGAAGTACCCACGTTGCATCGCAGACGGCAACGAGCTCCTCAGGTTCCATTGCACCACCTTGGCCTGCTCACTAGGCCTAAATGGCTCCTCCAACCTCTGCAATTCAATCCCACAATGCAGCATCTGTAGCACAATCAAGAATGGCTTCAAGGTCGTCGGAGAAACCACAGGAGGAGATGGCGCAAAGGGAATTCTAACAACTGCAACAAGTGGAAAGGCTCATGACAGTGCAGGAATATCATCTGAGGGCAATGAGAAAAGAGCAATGCTGGTTTGCCGGGTAATCGCCGGTAGGGTGAAGAAGAGTTTGGAGGGCAGTATGGAGGAGTATGATTCATTGGCTGGGGCAGCAGGCATGTATTCCAATTTGGATGAGTTGTATGTGTTTAGTCCCAAGGCTATATTGCCTTGTTTTGTTGTTATTTATGGAGGGTTTTAA 1287 45.38 MASTMAKTRIQRKPIKQSHENQKPKQQKAEKPPSWAVVVGILSCKYLQPQPQPQQHRQLPRKEKQKEQAAEESSKNCKKMRCSGSLCSNTKVTQRPETVLPPEVHKKRALTSMVSRNNDSSSSSRCIKAPHLNEHNGVLSATSSSLSASSSSNSSNGGSFRGMPFRRFYGCYECKMVIDPVLGINRDPSLRATICPCPECGEIFMKAETLELHQSVRHAVTELGPEDTSKNIVEIIFQSSWLKKQTPICKIERILKVQNTPKTISNFEEYRDSIKAKANKLPKKYPRCIADGNELLRFHCTTLACSLGLNGSSNLCNSIPQCSICSTIKNGFKVVGETTGGDGAKGILTTATSGKAHDSAGISSEGNEKRAMLVCRVIAGRVKKSLEGSMEEYDSLAGAAGMYSNLDELYVFSPKAILPCFVVIYGGF 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 666767 668267 + evm.model.ptg000021l.103 HCH13g0103 556608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0103 428 MobiDBLite consensus disorder prediction 98 127 - -
HCH13g0103 428 ProSitePatterns Zinc finger C2H2 type domain signature. 195 218 IPR013087 -
HCH13g0103 428 SUPERFAMILY ADP-ribosylation 220 426 - -
HCH13g0103 428 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 34 425 - -
HCH13g0103 428 ProSiteProfiles Zinc finger C2H2 type domain profile. 195 223 IPR013087 -
HCH13g0103 428 MobiDBLite consensus disorder prediction 113 127 - -
HCH13g0103 428 MobiDBLite consensus disorder prediction 1 34 - -
HCH13g0103 428 MobiDBLite consensus disorder prediction 48 75 - -
HCH13g0103 428 MobiDBLite consensus disorder prediction 13 27 - -
HCH13g0103 428 Gene3D - 219 426 - -
HCH13g0103 428 MobiDBLite consensus disorder prediction 57 75 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0129 HCH-Chr12:684508 HCH13g0103 HCH-Chr13:666767 6.00E-87 dispersed
HCH13g0103 HCH-Chr13:666767 HCH6g0724 HCH-Chr6:40770916 9.30E-62 dispersed
HCH13g0102 HCH-Chr13:662705 HCH13g0103 HCH-Chr13:666767 7.50E-144 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32767 None None None None HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0103 - - - 0.0