Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0119 ATGGCAGAAGAAACTTATAGCAAGAGGGTAGGCGCTGATCAATCTGAGGGCGGTGTAATAATGAGCAAATTAAAGCCTTATATTCTAATGGTGAGCCTTCAAGTTGGGATTGCAGGAATGTATATAATCATTATGGCAACTCTCAATCAAGGCATGAGCCGTTATGTTTTGATTGTGTATCGTAACGCTGTTGCTGCCATTGTTCTTGCACCTTTCGCTCTCATTTTTGAGAGAAAAACAAGGCCAAAGATGACTCTACCTGTCGCTCTGCAGATTATGGCTTTGGGTTTTCTGGAGCCAGTAATTGATCAAGGCTTCAGTTATTTGGGAATGAAGTACACTACAGCATCATTTACATCTGCTATCATGAATGCTGTGCCCTCTGTTACTTTTATAATCGCAGTCATTCTTAGGTTAGAACGTGTTAAGATAAAAGAAGTACGAGGTCAAGCCAAGGTGATTGGAACTCTAGTAACTTTTGTGGGTGCCTTGGTTATGACACTATACAAAGGCCCTGTCCTTGATTTCTTTTGGTCTCACAGAACCACCCACCACAGTGGCGCCGCCGCCTCCAATCAACACTGGCTCGCCGGAACTTTGTTCATCCTCGTCGGTTGCGTTGCTTGGTCTTCTTTCTATATACTCCAATCAATAACGGTGAAGAGATACCCGGCAGAACTATCTCTAGCGTCGTTGATATGCTTGGCTGGAGCAGTGCAAAGTGCGGTGATAGCAGTAGCTGTAGAGCATCATGCGAGCGCATGGGCAGTGGGGTGGGACTCTCGACTTCTAGCTCCTCTCTATACCGGAATTGTTGGGTCAGGAATAGCATATTATGTGCAGGCGCTGGTAATGAAGACGAGAGGTCCTGTATTTGTGACGGCTTTTAACCCTTTATGCATGATTATTGTCTCTATCATGGGTTCTATCATTCTAGCTGAGAAGCTTCATCTTGGAAGTGTGATTGGAGGCATTATCATCGCAATAGGCCTTTATTCAGTTGTGTGGGGGAAAAGCAAAGATTATTCCAACGCCAATGGCAGCCACCATGAAATTCCATTACCAATTTCAAAGCCTAATTCCAATGCATCCAAAGATATTAACATCATCACTACCAATCATGTTGATCTTCACCCTGCAAAATAG 1146 43.89 MAEETYSKRVGADQSEGGVIMSKLKPYILMVSLQVGIAGMYIIIMATLNQGMSRYVLIVYRNAVAAIVLAPFALIFERKTRPKMTLPVALQIMALGFLEPVIDQGFSYLGMKYTTASFTSAIMNAVPSVTFIIAVILRLERVKIKEVRGQAKVIGTLVTFVGALVMTLYKGPVLDFFWSHRTTHHSGAAASNQHWLAGTLFILVGCVAWSSFYILQSITVKRYPAELSLASLICLAGAVQSAVIAVAVEHHASAWAVGWDSRLLAPLYTGIVGSGIAYYVQALVMKTRGPVFVTAFNPLCMIIVSIMGSIILAEKLHLGSVIGGIIIAIGLYSVVWGKSKDYSNANGSHHEIPLPISKPNSNASKDINIITTNHVDLHPAK 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 752366 757059 + evm.model.ptg000021l.119 HCH13g0119 556624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0119 381 Pfam EamA-like transporter family 197 335 IPR000620 GO:0016020(InterPro)
HCH13g0119 381 Pfam EamA-like transporter family 28 167 IPR000620 GO:0016020(InterPro)
HCH13g0119 381 SUPERFAMILY Multidrug resistance efflux transporter EmrE 60 170 - -
HCH13g0119 381 PANTHER WAT1-RELATED PROTEIN 28 348 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
HCH13g0119 381 SUPERFAMILY Multidrug resistance efflux transporter EmrE 259 339 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0119 HCH-Chr13:752366 HCH9g0645 HCH-Chr9:4288877 4.60E-97 dispersed
HCH13g0119 HCH-Chr13:752366 HCH13g0120 HCH-Chr13:760102 1.60E-102 tandem
HCH12g0801 HCH-Chr12:5225712 HCH13g0119 HCH-Chr13:752366 4.40E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0119 - - - 0.0