Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0120 ATGGAAAGTAAAATGGTATGGAATATGGTAAGGAAAATAAAACCTTACTTAGCAATGGGGCTTCTCCAGATTTCTTATGCAGTCATGTATATAATCGTTTTAGTTGCTTTTAAGCATGGCTTGAACCATTTCGTTCTTTCCGTTTATCGCCATGCGCTCGCCACCGTGCTCATCGCCCCCTTCGCTCTTCTTCTTGAAAGGAAAATAAGGCCCTCAATGACATTGCCCATCTTGTTAAGAATAATATTACTTGGTTTCCTAGAGCCCGTTCTTGATCAGAATTTATACTATTTGGGAATGAAATATACTTCAGCAACATTTGCTGCCGCTGCTGCCAATGTGCTCCCTGCCTTAACTTTCATCGTGGCTGTCATTTTCAGGTTGGAAAGCTTGGACATAAAGAAAAAACATGGAATAGCCAAGGTGGTCGGAACGGTAATCACGGTGACCGGAGCAATGACTATGACATTGTACAAAGGGCCAGCGCTCAATATTCTTGACGGCGGTGGTACTAAAATGAGCCAAAATACAACGTCAAATGAATCCACAGATCATCAGCACTGGGTTATGGGCACCCTCTTTATCCTCATCAGTTGTTGCGGTTGGTCTGCCTTCTTCATTTTGCAGTCATTGACATTGAAATTGTACCCAGCAGAGCTCTCACTCGCAGGCTTAATATGCGTCACTGGAATGATTGAAGGAGGAATTCTAACTCTTGCCATTGAACGAGATATGAGCATCTGGATTATAGGCTGGGATTCAAGGCTTCTTGCTATCGTTTACACTGGAGTGATATGCTCTGGAATTGCATATTATGTTCAAGGAGTTGTGATTAGGGAACGAGGCCCTGTCTTTGCAACATCTTTTAGTCCTCTCATTATGATTGCTGCTGCTCTTCTTTCATCCATTTTTCTATCTGAGAAAATCCATCTTGGAAATGTGATTGGAGGGATTATCATAGTATTGGGGCTATACACAGTGATTTGGGGTAAAAGCAAAGATTTTGAAAGCTCCTCCTCCACAGCCTCAAATGGTTTGCCGATCACAAGCAGCGGTCTCCGATCAGCGACTGATGGTTGGAACGGCGTTGAAGTTGCCGGAAAGAAGGTGGAGGCTCCGGCGAAGCCTCCGAATGTCTAA 1140 43.68 MESKMVWNMVRKIKPYLAMGLLQISYAVMYIIVLVAFKHGLNHFVLSVYRHALATVLIAPFALLLERKIRPSMTLPILLRIILLGFLEPVLDQNLYYLGMKYTSATFAAAAANVLPALTFIVAVIFRLESLDIKKKHGIAKVVGTVITVTGAMTMTLYKGPALNILDGGGTKMSQNTTSNESTDHQHWVMGTLFILISCCGWSAFFILQSLTLKLYPAELSLAGLICVTGMIEGGILTLAIERDMSIWIIGWDSRLLAIVYTGVICSGIAYYVQGVVIRERGPVFATSFSPLIMIAAALLSSIFLSEKIHLGNVIGGIIIVLGLYTVIWGKSKDFESSSSTASNGLPITSSGLRSATDGWNGVEVAGKKVEAPAKPPNV 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 760102 762802 + evm.model.ptg000021l.120 HCH13g0120 556625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0120 379 MobiDBLite consensus disorder prediction 336 356 - -
HCH13g0120 379 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 150 - -
HCH13g0120 379 SUPERFAMILY Multidrug resistance efflux transporter EmrE 248 333 - -
HCH13g0120 379 PANTHER WAT1-RELATED PROTEIN 17 339 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
HCH13g0120 379 Pfam EamA-like transporter family 24 149 IPR000620 GO:0016020(InterPro)
HCH13g0120 379 Pfam EamA-like transporter family 190 328 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0801 HCH-Chr12:5225712 HCH13g0120 HCH-Chr13:760102 7.00E-122 dispersed
HCH13g0120 HCH-Chr13:760102 HCH9g0974 HCH-Chr9:7272502 1.90E-87 dispersed
HCH13g0119 HCH-Chr13:752366 HCH13g0120 HCH-Chr13:760102 1.60E-102 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0120 - - - 0.0