Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0126 ATGCCAAACCAAACCCCCAAATTCTTCATATTTCTAGTTACAGCTACAATTTTCACCAATGGGGTTTTAGTAATTGCAAAATCAACCATAGAACCATGCTCGAATTCAGATTCTTGCAATGCCTTATTAGGCTACACTCTCTACACAGATCTCAAAGTTTCAGAAGTTGCTTCCCTTTTCCAAATTGACCCCATTTCAATTCTCACTTCCAATTCCATAGATATCTCATTCCCAGATGTTGAAAATCACATTCTCCCTTCTAAGCTTTTCCTCAAAATCCCAATTTCTTGTTCTTGCGTTGATGGCATTCGGAAATCTGTCACGACTCGTTACAAAACCCGGCCTTCCGATACGCTGTCGTCGATTGCCGATTCGGTTTATTCGGGGTTGGTTTCGTCGGATCAGATTCGTGAGGCTAATTTGAATTCTATACCTGACCCTGATGTTCTTGATGTGGGGCAGATTCTTGTTGTGCCATTGCCTTGTACTTGTTTTAATGGGACTGATAATGGATTGCCTGCAATTTATTTGTCTTATGTTGTGAATTTGGATGATACTTTGGCTGGAATTGCTGTCAGATATTCTACTACAATTACTGATTTGATGAATGTTAATGCTATGGGGAATCCTGCTATTAAGCCTGGTGATATTTTGGCTGTTCCTTTACCAGCTTGTGCATCCAAATTTCCTAGATACGCCTCTGATTTTGGATTGATCGTGCCTAATGGAAGCTATGCAATAGTGGCGAGTCATTGTGTACAATGTAGTTGCGGGCCTGCAAATCTCAATATGTACTGCATGCCTGCTGCGTTAGCAGTTTCTTGTTCGAGCATGCAATGTAGAAACAGCAATCTCATGCTTGGGAATTTCACTGCACAGCAGAGTAGTGCAGGTTGCAATGTAACTTCTTGTAGCTATGGTGGTTTTGTAAACGGCACCATACTGACAACGTTGTCCACAAATCTTCAACCTCGATGCCCAGGGCCACAGCAATTTCCCACACTTATAGCCCCACCTTCTTCGGTAGTCAGAGATTCAAACTTTGCACCTGTTCCGGCTCCTCAATTTGACGGTTCTGGATCATTAGCACCCAAATCATCATTGGTGCCTACAACGATTGGATCTCTCCCCGGATTTCCTCCTGCCAACAGCCCTATTGGAAGTTCTTCTGGATTGGGTTCAGGGCCTTCTGGTGGTTCTTCCTCTTTGATGAATCCATTAGCTAGTAACCCAGCTGCCTTCCTCTTATTTATCCTGGTCACCTTCATTTTATCCATTTCATTGTAG 1287 42.81 MPNQTPKFFIFLVTATIFTNGVLVIAKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPISILTSNSIDISFPDVENHILPSKLFLKIPISCSCVDGIRKSVTTRYKTRPSDTLSSIADSVYSGLVSSDQIREANLNSIPDPDVLDVGQILVVPLPCTCFNGTDNGLPAIYLSYVVNLDDTLAGIAVRYSTTITDLMNVNAMGNPAIKPGDILAVPLPACASKFPRYASDFGLIVPNGSYAIVASHCVQCSCGPANLNMYCMPAALAVSCSSMQCRNSNLMLGNFTAQQSSAGCNVTSCSYGGFVNGTILTTLSTNLQPRCPGPQQFPTLIAPPSSVVRDSNFAPVPAPQFDGSGSLAPKSSLVPTTIGSLPGFPPANSPIGSSSGLGSGPSGGSSSLMNPLASNPAAFLLFILVTFILSISL 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 779220 781246 - evm.model.ptg000021l.126 HCH13g0126 556631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0126 428 Gene3D LysM domain 105 167 IPR036779 -
HCH13g0126 428 CDD LysM 109 158 IPR018392 -
HCH13g0126 428 ProSiteProfiles LysM domain profile. 109 158 IPR018392 -
HCH13g0126 428 SMART LysM_2 110 159 IPR018392 -
HCH13g0126 428 SMART LysM_2 178 221 IPR018392 -
HCH13g0126 428 ProSiteProfiles LysM domain profile. 177 220 IPR018392 -
HCH13g0126 428 Gene3D LysM domain 177 221 IPR036779 -
HCH13g0126 428 SUPERFAMILY LysM domain 177 222 IPR036779 -
HCH13g0126 428 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 20 328 - -
HCH13g0126 428 CDD LysM 178 220 IPR018392 -
HCH13g0126 428 Pfam LysM domain 179 221 IPR018392 -
HCH13g0126 428 Pfam LysM domain 111 159 IPR018392 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0126 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH13g0126 . 4 390 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 72.0 8.2e-156 547.0
HCH13g0126 . 1 418 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 59.8 6.2e-135 477.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007180 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 37