Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0137 ATGGAGTTGAAAGGTGAAGTTGCAGAAATCCAACAGCAGCAAAATTTCCATGTGCTGGCAGTGGATGATAGCCTTATAGACAGAAAGCTCTTGGAAAAGCTCCTCAGAATTTCTTCATGCAAAGTTACCTGTGTGGAATCTGGGGACAAAGCTTTGAGATATCTTGGACTTCTTGATGATCTTGACAAGTTTTCTTCTTCTACTGCTTCATTTTCTTCTCCACATCTCTCCCAACAACAGGAAGTCAAAGTCAACCTAATCATGACAGACTTCTGTATGCCTGGGATGACTGGCTATGATTTGCTCAAACGACTCAAGGGATCTTCTTGGAAAGATGTACCTGTCGTGGTCATGTCATCAGAGAATGTGCCTTCAAGAATCAACATGTGCTTGGAAGAAGGGGCGGAGGAATTTCTTCTTAAGCCTATTCAGTTATCAGATGTAAAGAAGCTCGAACCTCATCTTCAAAAGTCCCTCAGTCGTGATTCTTCTCCGAACACGGAAGAAGAAACCATCGCGATCACTACCACCATCACCGTTATTGATGATGGAAATGTGAAATTAGAAGATGACAATAACGACGATAACAATAACGACAACAACAATATTGTCAGTAAGAGAAAGGCAACGACCCCAGAGTCGCCTGAAAGAAGACCCAAACTGAAAGAATTATAG 675 41.93 MELKGEVAEIQQQQNFHVLAVDDSLIDRKLLEKLLRISSCKVTCVESGDKALRYLGLLDDLDKFSSSTASFSSPHLSQQQEVKVNLIMTDFCMPGMTGYDLLKRLKGSSWKDVPVVVMSSENVPSRINMCLEEGAEEFLLKPIQLSDVKKLEPHLQKSLSRDSSPNTEEETIAITTTITVIDDGNVKLEDDNNDDNNNDNNNIVSKRKATTPESPERRPKLKEL 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 879166 881924 + evm.model.ptg000021l.137 HCH13g0137 556642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0137 224 ProSiteProfiles Response regulatory domain profile. 17 156 IPR001789 GO:0000160(InterPro)
HCH13g0137 224 Gene3D - 17 203 - -
HCH13g0137 224 Pfam Response regulator receiver domain 73 149 IPR001789 GO:0000160(InterPro)
HCH13g0137 224 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 208 IPR045279 GO:0009736(InterPro)
HCH13g0137 224 SMART REC_2 16 152 IPR001789 GO:0000160(InterPro)
HCH13g0137 224 MobiDBLite consensus disorder prediction 210 224 - -
HCH13g0137 224 SUPERFAMILY CheY-like 15 150 IPR011006 -
HCH13g0137 224 CDD REC_typeA_ARR 18 151 - -
HCH13g0137 224 MobiDBLite consensus disorder prediction 184 224 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1194 HCH-Chr10:42716281 HCH13g0137 HCH-Chr13:879166 2.20E-45 dispersed
HCH13g0137 HCH-Chr13:879166 HCH9g1007 HCH-Chr9:8043156 8.90E-48 dispersed
HCH12g0816 HCH-Chr12:5338825 HCH13g0137 HCH-Chr13:879166 3.40E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32772 PF00072 Response_reg 2.00E-17 CL0304 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0137 K14492 - csv:101216267 286.189