Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0142 ATGGCAGAAGCAATTTCTCTCATGGAAATCGACGACGACGACGACAACAATCACGCTGGAAACGCCGCCGTTCCTTTAACCCCTCCCAAAGCCATACCTTGGGTCGAGAAATTCCGACCTAAATCCCTCGCTGACGTCGCCGCCCATCGCGACATTGTCGATACCATTGATAAGTTGACAAGTGAGAATAGGCTACCACATCTCTTGTTGTATGGTCCTCCTGGTACGGGTAAAACGTCGACTATTTTAGCGGTTGCACGGAAGCTTTATGGATCAAACTATCATAATATGATTTTGGAGCTAAATGCTTCTGATGACCGAGGAATTGATGTTGTGAGGAAGCAGATTCAGGACTTTGCTAGTACACAAAGTTTTTCATTTGGGGCAAAAGCATCTGTAAAACTGGTACTATTGGATGAGGCAGACGCCATGACTAAAGATGCACAGTTTGCGTTGCGTAGAGTGATTGAGAAATATACAAAAAACACAAGGTTTGCTCTTATATGTAATCATGTGAATAAGATTATTCCAGCATTACAATCAAGGTGTACCCGCTTTCGATTTGCTCCCCTTGATAGCTTTCATGTCACGGAAAGACTCAAACATGTTATTGAGGCTGAAAGGTTGGATGTCACTGGAAGTGGTTTAGCAGCTCTTGTTCGGCTTAGCAATGGTGATATGAGAAAGGCTTTGAATATCCTGCAGTCGACCCATATGGCTTCTCAGCATATTACTGAAGAAGCTGTATACCTGTGCACAGGAAATCCAATGCCTAAAGACATTGAGCAAATATCATTTTGGCTGCTGAATGAACCATTTACAGATAGTTTTAAGCGAATATCCGAATTAAAGACCAGGAAAGGATTAGCAATGGTTGATATAGTAAGAGAAGTCACTATGTTTGTTTTTAAAATCAAGATGCCATCAGATGTCAGAGTTCAGTTAATCAATGATCTGGCTGACATAGAGTACAGGATGAGTTTCGGATGCAATGACAAGTTGCAACTTGGATCACTCATTTCGTCATTTACTCGAGCTAGATCGGCGCTCATTGACGCTGCCGGGTAA 1068 42.42 MAEAISLMEIDDDDDNNHAGNAAVPLTPPKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGSNYHNMILELNASDDRGIDVVRKQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDSFHVTERLKHVIEAERLDVTGSGLAALVRLSNGDMRKALNILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFTDSFKRISELKTRKGLAMVDIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALIDAAG 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 912996 916931 + evm.model.ptg000021l.142 HCH13g0142 556647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0142 355 Pfam ATPase family associated with various cellular activities (AAA) 68 190 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
HCH13g0142 355 Pfam RCF1/5-like, AAA+ ATPase lid domain 199 238 - -
HCH13g0142 355 SUPERFAMILY post-AAA+ oligomerization domain-like 256 346 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
HCH13g0142 355 CDD HLD_clamp_RFC 195 253 IPR047854 -
HCH13g0142 355 Pfam Replication factor C C-terminal domain 256 341 IPR013748 -
HCH13g0142 355 Gene3D - 28 190 IPR027417 -
HCH13g0142 355 Gene3D - 194 255 - -
HCH13g0142 355 FunFam Replication factor C subunit 5 193 255 - -
HCH13g0142 355 CDD AAA 52 190 - -
HCH13g0142 355 Gene3D - 256 352 - -
HCH13g0142 355 SMART AAA_5 64 194 IPR003593 GO:0016887(InterPro)
HCH13g0142 355 FunFam Replication factor C subunit 5 256 353 - -
HCH13g0142 355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 249 IPR027417 -
HCH13g0142 355 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 33 347 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
HCH13g0142 355 FunFam Replication factor C subunit 5 27 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0142 HCH-Chr13:912996 HCH6g0944 HCH-Chr6:44225786 1.00E-53 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0142 K10756 - csv:101217230 618.231