Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH13g0142 | ATGGCAGAAGCAATTTCTCTCATGGAAATCGACGACGACGACGACAACAATCACGCTGGAAACGCCGCCGTTCCTTTAACCCCTCCCAAAGCCATACCTTGGGTCGAGAAATTCCGACCTAAATCCCTCGCTGACGTCGCCGCCCATCGCGACATTGTCGATACCATTGATAAGTTGACAAGTGAGAATAGGCTACCACATCTCTTGTTGTATGGTCCTCCTGGTACGGGTAAAACGTCGACTATTTTAGCGGTTGCACGGAAGCTTTATGGATCAAACTATCATAATATGATTTTGGAGCTAAATGCTTCTGATGACCGAGGAATTGATGTTGTGAGGAAGCAGATTCAGGACTTTGCTAGTACACAAAGTTTTTCATTTGGGGCAAAAGCATCTGTAAAACTGGTACTATTGGATGAGGCAGACGCCATGACTAAAGATGCACAGTTTGCGTTGCGTAGAGTGATTGAGAAATATACAAAAAACACAAGGTTTGCTCTTATATGTAATCATGTGAATAAGATTATTCCAGCATTACAATCAAGGTGTACCCGCTTTCGATTTGCTCCCCTTGATAGCTTTCATGTCACGGAAAGACTCAAACATGTTATTGAGGCTGAAAGGTTGGATGTCACTGGAAGTGGTTTAGCAGCTCTTGTTCGGCTTAGCAATGGTGATATGAGAAAGGCTTTGAATATCCTGCAGTCGACCCATATGGCTTCTCAGCATATTACTGAAGAAGCTGTATACCTGTGCACAGGAAATCCAATGCCTAAAGACATTGAGCAAATATCATTTTGGCTGCTGAATGAACCATTTACAGATAGTTTTAAGCGAATATCCGAATTAAAGACCAGGAAAGGATTAGCAATGGTTGATATAGTAAGAGAAGTCACTATGTTTGTTTTTAAAATCAAGATGCCATCAGATGTCAGAGTTCAGTTAATCAATGATCTGGCTGACATAGAGTACAGGATGAGTTTCGGATGCAATGACAAGTTGCAACTTGGATCACTCATTTCGTCATTTACTCGAGCTAGATCGGCGCTCATTGACGCTGCCGGGTAA | 1068 | 42.42 | MAEAISLMEIDDDDDNNHAGNAAVPLTPPKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGSNYHNMILELNASDDRGIDVVRKQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDSFHVTERLKHVIEAERLDVTGSGLAALVRLSNGDMRKALNILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFTDSFKRISELKTRKGLAMVDIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALIDAAG | 355 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 912996 | 916931 | + | evm.model.ptg000021l.142 | HCH13g0142 | 556647 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH13g0142 | 355 | Pfam | ATPase family associated with various cellular activities (AAA) | 68 | 190 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
HCH13g0142 | 355 | Pfam | RCF1/5-like, AAA+ ATPase lid domain | 199 | 238 | - | - | |
HCH13g0142 | 355 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 256 | 346 | IPR008921 | GO:0003677(InterPro)|GO:0006260(InterPro) | |
HCH13g0142 | 355 | CDD | HLD_clamp_RFC | 195 | 253 | IPR047854 | - | |
HCH13g0142 | 355 | Pfam | Replication factor C C-terminal domain | 256 | 341 | IPR013748 | - | |
HCH13g0142 | 355 | Gene3D | - | 28 | 190 | IPR027417 | - | |
HCH13g0142 | 355 | Gene3D | - | 194 | 255 | - | - | |
HCH13g0142 | 355 | FunFam | Replication factor C subunit 5 | 193 | 255 | - | - | |
HCH13g0142 | 355 | CDD | AAA | 52 | 190 | - | - | |
HCH13g0142 | 355 | Gene3D | - | 256 | 352 | - | - | |
HCH13g0142 | 355 | SMART | AAA_5 | 64 | 194 | IPR003593 | GO:0016887(InterPro) | |
HCH13g0142 | 355 | FunFam | Replication factor C subunit 5 | 256 | 353 | - | - | |
HCH13g0142 | 355 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 32 | 249 | IPR027417 | - | |
HCH13g0142 | 355 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 33 | 347 | IPR050238 | GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER) | |
HCH13g0142 | 355 | FunFam | Replication factor C subunit 5 | 27 | 191 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g0142 | HCH-Chr13:912996 | HCH6g0944 | HCH-Chr6:44225786 | 1.00E-53 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH13g0142 | K10756 | - | csv:101217230 | 618.231 |