Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH13g0148 | ATGGAAGGCCAGAGTCAACAAACTCAAATGAGTATCGTTGTAGCGTCGTCGTTTGGTAGTGGCAGCAACCGTATCGTCGCCATTAACACGACGGAGAAAACTCCTCCGACCAATATCACGAAACCATCCAATCAACAAGAACAACAGAAACCTGGTTGGAGAAAATTTCTGTCACATGTGGGCCCCGGCTTCCTCGTTTCATTGGCTTACCTCGACCCCGGAAACTTGGAAACTGACCTGCAGGCTGGAGCCAATCATGGATACGAGCTATTATGGGTGGTGTTGATTGGATTGATATTTGCCCTTATAATCCAATCCCTTGCAGCAAATCTTGGTGTAAGCACTGGAAAACACCTATCAGAAGTATGCAAGGAGGAGTACCCAAGATTTGTGAAGTACTGCCTTTGGATTCTGGCTGAACTCGCCGTAATAGCCGCTGATATTCCAGAAGTGATAGGAACAGCCTTTGCTCTGAATATACTATTCCATATCCCGGTTTGGGCTGGAGTTCTTCTCACCGGTTTAAGCACCCTCTTACTCATCGGTCTCCAGAGATATGGGGTGAGGAAGCTGGAATTGCTGATAGCAATATTAGTATTCATAATGGCTGCATGTTTCTTCGGAGAAATGAGCTACGTAAAGCCTCCGGCGACCGGAGTCCTAAAAGGAATGTTCGTCCCCAAACTCAACGGCCAGGGAGCTACCGGCGATGCCATCGCGCTTCTCGGAGCCCTCGTTATGCCCCACAATCTCTTTCTTCATTCTGCTCTTGTTCTCTCAAGGAGAGTCCCAAACTCCGTCCGTGGCATCAATGACGCATGCAGATACTTCCTGCTGGAGAGTGGGTTTGCATTGTTGGTAGCATTTTTGATAAACGTAGCAGTCGTATCAGTCTCCGGCACCGTTTGTACGGCCTCCAACATCTCTCAGACCACCGCCGATCAGTGTAGCGATATCACTCTCAATTCTGCGTCCTTCCTTCTTAAGAACGTTTTGGGAAAATCGAGTTCCACAATTTATGCGATTGCTTTGCTTGCCTCTGGACAAAGCTCCAGCATTACTGGCACTTACGCTGGTCAGTTCATTATGCAGGGATTTTTGGACCTGAAAATGAAAACGTGGGCAAGGAACCTTATGACGAGGTCCATTGCCATTACGCCAAGTCTCATCGTCTCCATCATCGGTGGATCTCAAGGAGCTGGACGTCTCATCATTATCGCATCGATGATTCTTTCCTTTGAGCTCCCATTTGCTCTAATTCCACTCCTCAAATTCAGTAGCAGTACAACCAAGATGGGCCCCCACAAGAACTCCATATACATAATTGTCATCTCATGGATATTGGGCCTTGCAATCATAGGCATCAACATTTATTATCTCAGTACGGCCTTCGTGGGCTGGCTCATTGACAATAATTTACCCAAAGTAGCAAATGTCTTTATTGGAATCATTGTATTTCCATTAATGGCCATTTATATTCTCTCTATTATATACCTTACGTTTCGAAAGGACAGGGTTGTGACCTATATTGAGCCTGAAAAGCCTGACCCAATGGCCCAAGCCCACATGGAAAGTGGGCTCACTAATTCTTTTGGGCCTGGTGATGTCGGCCCGGTTCCTTTCAGAGAGGATTTAGCCCATATCCCTTTACCGGAATAG | 1659 | 46.71 | MEGQSQQTQMSIVVASSFGSGSNRIVAINTTEKTPPTNITKPSNQQEQQKPGWRKFLSHVGPGFLVSLAYLDPGNLETDLQAGANHGYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSEVCKEEYPRFVKYCLWILAELAVIAADIPEVIGTAFALNILFHIPVWAGVLLTGLSTLLLIGLQRYGVRKLELLIAILVFIMAACFFGEMSYVKPPATGVLKGMFVPKLNGQGATGDAIALLGALVMPHNLFLHSALVLSRRVPNSVRGINDACRYFLLESGFALLVAFLINVAVVSVSGTVCTASNISQTTADQCSDITLNSASFLLKNVLGKSSSTIYAIALLASGQSSSITGTYAGQFIMQGFLDLKMKTWARNLMTRSIAITPSLIVSIIGGSQGAGRLIIIASMILSFELPFALIPLLKFSSSTTKMGPHKNSIYIIVISWILGLAIIGINIYYLSTAFVGWLIDNNLPKVANVFIGIIVFPLMAIYILSIIYLTFRKDRVVTYIEPEKPDPMAQAHMESGLTNSFGPGDVGPVPFREDLAHIPLPE | 552 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 941611 | 947451 | - | evm.model.ptg000021l.148 | HCH13g0148 | 556653 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH13g0148 | 552 | PRINTS | Natural resistance-associated macrophage protein signature | 376 | 393 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| HCH13g0148 | 552 | PRINTS | Natural resistance-associated macrophage protein signature | 188 | 209 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| HCH13g0148 | 552 | PRINTS | Natural resistance-associated macrophage protein signature | 408 | 427 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| HCH13g0148 | 552 | PRINTS | Natural resistance-associated macrophage protein signature | 163 | 182 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| HCH13g0148 | 552 | PRINTS | Natural resistance-associated macrophage protein signature | 238 | 261 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| HCH13g0148 | 552 | PRINTS | Natural resistance-associated macrophage protein signature | 348 | 367 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| HCH13g0148 | 552 | PRINTS | Natural resistance-associated macrophage protein signature | 135 | 161 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| HCH13g0148 | 552 | PANTHER | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER | 43 | 511 | IPR001046 | GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| HCH13g0148 | 552 | NCBIfam | Nramp family divalent metal transporter | 61 | 427 | - | - | |
| HCH13g0148 | 552 | MobiDBLite | consensus disorder prediction | 32 | 51 | - | - | |
| HCH13g0148 | 552 | Hamap | Divalent metal cation transporter MntH [mntH]. | 42 | 464 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| HCH13g0148 | 552 | NCBIfam | metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family | 54 | 430 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| HCH13g0148 | 552 | Pfam | Natural resistance-associated macrophage protein-like | 77 | 438 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH11g0756 | HCH-Chr11:36773082 | HCH13g0148 | HCH-Chr13:941611 | 4.80E-166 | dispersed | |
| HCH13g0148 | HCH-Chr13:941611 | HCH6g0290 | HCH-Chr6:4090832 | 7.30E-168 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH13g0148 | K21398 | - | csv:101219356 | 944.11 |