Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0150 ATGTCAGCCCATAATCGTCGTCCGTCGTTTTCTACATCGACATCGTCGTCTTTGGCTAAACGACAAGCGTCGTCTTCGTCGTCATCGGAAAATGTCGGAAAAGTTATGGCAATTCCGGCGAAGAAGAGAGCGCCTCTTAGTAATCTCTCAAATCTTAAGAATTTGCCTCATAGCACTGCTAAAAGCGTTGTTCCGTTGAATATTATGGTACCTTGTGCAACTAAAATTGTCAAGGCCAGAAAGGGTTCCCCTGCTAGAACTCGTAGCACGAAACCGCCTGCAAATAATACGACCGCTGTGATTGAAGTTAAACAGACTGTAATTGCCCCTAGCAATGTTATAACTTTCTCAAGAAGTGATGCCGCCGTCTCTAGTAGTATGGATATCTCTCCTTCTAAATCAGATGCAAATTCAGTCTCTTTGGATGAGAGTATGTCTACTTGTGGATCTTTTAAGAGTCCTGAAGTTGAGTACATGGATAACGATGATGTTCCAGCAGTTGATTCCATTGAGAGGAAAACTTTTAGCACTCTTTGTATTTCAGATCATGCATCAATCAAAGGTAATATATGCAATAGAGATGTACTTGCAGAAATGGAAACAGATGGGGATGTTATCGATGTTGATAAGGATTTCATGGACCCGCAACAATGTGCTACAATTGCTTGTGATATTTACAAGCACTTACGAGCATCTGAGATAAAGAAAAGACCTTCCACAGACTTCATGGAAAGAGTACAGAAGGATATAAATCCCAATATGCGTGCTATCCTGATTGATTGGCTTGTGGAGGTGGCCGAAGAGTACAGACTTGTACCAGATACTCTATATTTGACTGTAAACTACATAGACCGATACCTATCTGGAAATGTGATGGATCGACAGCGATTACAGTTGCTTGGTGTTGCTTGTATGATGATTGCTTCAAAATATGAAGAGATTTGTGCACCTCAAGTGGAAGAATTTTGTTACATAACTGATAACACGTATTTCAAAGAAGAGGTTTTGCAAATGGAATCTTCTGTTTTGAATTACTTGAAGTTCGAAATGACAGCTCCAACAGCAAAATGCTTCTTAAGACGATTTGTCCGTGCTGCCCAAGGTGTTAATGAGGTTCCATCAATGCAGTTGGAGTGCTTGGCCAACTTCCTCGCCGAACTATCTCTTCTAGAGTACAGCATGCTAGGTCATGCCCCCTCGCTTATAGCCGCTTCCGCAATCTTTTTAGCAAAATTCATACTTCTCCCCACAAAGAGACCATGGAACTCCACCCTGCAACATTATACACATTACCAGCCATCTGATCTTTGCGATTGCGTTAAGGAATTACATCGCCTCTGCTGTAACACGCATAATTCGAGCTTACCGGCGGTCAGGGAGAAATACAGCCAGCATAAGTACAAGCATGTGGCAAAGAAGTATTGTCCTCCTTTGATACCTTCAGAATATTTCCAGAGTCAAAATCATTAG 1470 41.7 MSAHNRRPSFSTSTSSSLAKRQASSSSSSENVGKVMAIPAKKRAPLSNLSNLKNLPHSTAKSVVPLNIMVPCATKIVKARKGSPARTRSTKPPANNTTAVIEVKQTVIAPSNVITFSRSDAAVSSSMDISPSKSDANSVSLDESMSTCGSFKSPEVEYMDNDDVPAVDSIERKTFSTLCISDHASIKGNICNRDVLAEMETDGDVIDVDKDFMDPQQCATIACDIYKHLRASEIKKRPSTDFMERVQKDINPNMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNVMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESSVLNYLKFEMTAPTAKCFLRRFVRAAQGVNEVPSMQLECLANFLAELSLLEYSMLGHAPSLIAASAIFLAKFILLPTKRPWNSTLQHYTHYQPSDLCDCVKELHRLCCNTHNSSLPAVREKYSQHKYKHVAKKYCPPLIPSEYFQSQNH 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 958674 961753 + evm.model.ptg000021l.150 HCH13g0150 556655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0150 489 SUPERFAMILY Cyclin-like 214 350 IPR036915 -
HCH13g0150 489 ProSitePatterns Cyclins signature. 255 286 IPR048258 -
HCH13g0150 489 CDD CYCLIN_AtCycA_like_rpt1 214 349 - -
HCH13g0150 489 SUPERFAMILY Cyclin-like 353 477 IPR036915 -
HCH13g0150 489 MobiDBLite consensus disorder prediction 1 33 - -
HCH13g0150 489 Gene3D - 238 351 - -
HCH13g0150 489 SMART cyclin_7 357 445 IPR013763 -
HCH13g0150 489 SMART cyclin_7 260 344 IPR013763 -
HCH13g0150 489 PANTHER CYCLINS 206 464 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
HCH13g0150 489 Gene3D - 224 472 - -
HCH13g0150 489 Pfam Cyclin, C-terminal domain 353 473 IPR004367 -
HCH13g0150 489 FunFam Cyclin A1 340 472 - -
HCH13g0150 489 PIRSF Cyclin_A_B_D_E 2 486 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
HCH13g0150 489 CDD CYCLIN_AtCycA-like_rpt2 353 467 - -
HCH13g0150 489 SMART Cyclin_C_2 353 476 IPR004367 -
HCH13g0150 489 FunFam Mitotic cyclin 6 238 338 - -
HCH13g0150 489 Pfam Cyclin, N-terminal domain 224 351 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0581 HCH-Chr12:3405954 HCH13g0150 HCH-Chr13:958674 6.30E-75 dispersed
HCH13g0150 HCH-Chr13:958674 HCH4g0400 HCH-Chr4:2601293 3.60E-78 dispersed
HCH13g0150 HCH-Chr13:958674 HCH4g1352 HCH-Chr4:9549372 3.00E-88 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0150 K06627 - csv:101221569 758.829