Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0172 ATGGATTTATCAGAGACTATAAGGCAATTCATGACCATATTTGTGGTCATTTTATCAACAGCAATAGTAGCCACGGCAGGCGACCGGGCCGTCGACTCTCCTCTGGCCTTGCCGGGTTGCCCTGAACGGTGTGGCGATTTAACAATTCCATATCCATTTGGCATGAGGGAAGGCTGTTATCTAGACAAATTCTTTTTCATCGAATGCAACACCAGCAACAATTTGGCATTTGTGGGCGAAACTATGATTAGAGTCACTAATATTTCCATCATTGACATGGAGCTTACAATCCTTCAATCTATATCATATTATTGTAATAATATCAATTTCAATGCTTCTCTTTCAATCAACGTGGCGAATTTACTTTTCTCCAATACCAAGAATAAGTTTACTGCTATTGGCTGCAAGAATTACGCTTATTTAACTGGTTCCTTGGAGGGAAAGCCTTATACAACTGGCTGCATGGCTCTATGCAACAGTAAGGACACTTTAAGAAATGGAACTTGCTCTGGTGGTGGATGTTGTCAATTGGAAATTCCTAAAGGACTAGAACAAATCAGTTTCCAGGTTGCTGGCTTCGCAAATTACTCGACGGTATCGAGATTTAACGACTGTGGCTATGCGTTTGTGGTTGAAGAAAGCAAGTTTAGTTTCTCAACAACCTATGTTACTGACTTCCTGCCTGATAAGGAGGTTCCTTTGGTGATTGATTGGAGCATCTTGAATGACACTTGCGAAGGATCTAAGGACAAAGACAAGTGTATATGTGGGGGAAACACCACCATTCTATTCCTTGAGAAGGGATCTGGACCATCAGGATATCGTTGCAAGTGCCTTGATGGTTTCGAGGGGAATCCTTACACTATTGGTTGTCAAGACATTGATGAATGTAAGGATAAAAGTCTCCATAAATGTAAAAATGAGTGTCACAACACCATAGGAAACTATACCTGCTCTTGTCCAAAAGGTTTTGAAGGAGATTCCAGATATGGTGGAGAAGGTTGCAGCCCTAAACGGACTTTCATTATTCAGATTGCAGTAGGGATTGGAGTTGGTTTTATAGCATTATTAATTGGCAGTTCATGGATATACTTGGGGTACAAAAGGTGGGAATTCATGAAACTAAAACACAAATTCTTTGAACAAAATGGTGGTTTGATGTTACAACAACATCTTTCAAGATGGCAAAGTCAAGGAACTTCTGACATGGCTAAAATCTTCTCCCAAACAGAACTTGAGAAAGCCACAAACAACTTTCATGAAAGTGCTGTTGCAGGCAAAGGTGGATTTGGAACAGTTTACAGAGGAGTTTTGGAAGATGGTCTGATTGTTGCAATCAAAAAGTCAAAACTGGTTGACCAATCCCAGATCGAACAATTCATTAATGAAGTCATTGTTTTGTCCCAAATCAATCATAGGAATGTGGTAAGGCTTCTTGGTTGCTGTTTGGAAACAGAAGTTCCTTTGCTTGTCTATGAATTTATCAACAATGGGACTCTTTTTGATCATCTTCATAACAACAAAACCAGCCCACTTTCATGGGAAACTCGTTTGAAAATCGCTTCAGAAACTGCAGGTGTGCTTTCATATTTGCATTCCTCAGCTTTCACTCCCATAATTCATAGAGATATCAAGCCTACAAACATTCTGTTAGATGAAAACTACACTGCAAAAGTATCGGATTTCGGTGCTTCGAAACTGGTTCCGATCGATCAAACTCAATTATCGACTATGGTGCAAGGAACACTCGGATACTTAGACCCGGAATATTTGTTGACAAGCGAGTTGACAGAGAAGAGTGATGTTTATAGCTTCGGAATCGTTTTGATCGAGCTACTAACCGGAAAGAAGGCGATTTCCTTCGAGGGTCCGGAAGCTGAAAGGAATCTAGCTATGTACTTCATTTGTGCAATGAAAGGAGATAGCTTTGAAGAGATTGTTGACAAGGAAATGGTGAAAGAGACAAATTTGAAGCAGATTAAAGAAGCAGCAAACCTTGCAAAGATGTGCTTGAGAGTAAAAGGGGAGGAAAGGCCTAGCATGAAGGAAGTAGCAACTGAGTTAGAAGGGTTGAAGATGATGGTGGAGAATCTATCCATCCGTACGATATCTCATTCCGAAGAATCAGAATATTTGATAGGAAGAGAAGCTGAAGGAAGTGAATTTTTTTCAGTGGATGAGAGCATGAAGGCTCATGTTGGATTCCAATTCCAAGCTCGTGATGGAAGATGA 2232 40.32 MDLSETIRQFMTIFVVILSTAIVATAGDRAVDSPLALPGCPERCGDLTIPYPFGMREGCYLDKFFFIECNTSNNLAFVGETMIRVTNISIIDMELTILQSISYYCNNINFNASLSINVANLLFSNTKNKFTAIGCKNYAYLTGSLEGKPYTTGCMALCNSKDTLRNGTCSGGGCCQLEIPKGLEQISFQVAGFANYSTVSRFNDCGYAFVVEESKFSFSTTYVTDFLPDKEVPLVIDWSILNDTCEGSKDKDKCICGGNTTILFLEKGSGPSGYRCKCLDGFEGNPYTIGCQDIDECKDKSLHKCKNECHNTIGNYTCSCPKGFEGDSRYGGEGCSPKRTFIIQIAVGIGVGFIALLIGSSWIYLGYKRWEFMKLKHKFFEQNGGLMLQQHLSRWQSQGTSDMAKIFSQTELEKATNNFHESAVAGKGGFGTVYRGVLEDGLIVAIKKSKLVDQSQIEQFINEVIVLSQINHRNVVRLLGCCLETEVPLLVYEFINNGTLFDHLHNNKTSPLSWETRLKIASETAGVLSYLHSSAFTPIIHRDIKPTNILLDENYTAKVSDFGASKLVPIDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLIELLTGKKAISFEGPEAERNLAMYFICAMKGDSFEEIVDKEMVKETNLKQIKEAANLAKMCLRVKGEERPSMKEVATELEGLKMMVENLSIRTISHSEESEYLIGREAEGSEFFSVDESMKAHVGFQFQARDGR 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1161633 1164636 + evm.model.ptg000021l.172 HCH13g0172 556677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0172 743 SUPERFAMILY EGF/Laminin 292 328 - -
HCH13g0172 743 ProSiteProfiles Protein kinase domain profile. 419 691 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0172 743 SMART egfca_6 293 336 IPR001881 GO:0005509(InterPro)
HCH13g0172 743 FunFam Wall-associated receptor kinase 2 495 711 - -
HCH13g0172 743 Pfam Wall-associated receptor kinase galacturonan-binding 40 97 IPR025287 GO:0030247(InterPro)
HCH13g0172 743 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 309 320 IPR000152 -
HCH13g0172 743 SMART serkin_6 419 694 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0172 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0172 743 Gene3D Laminin 242 332 - -
HCH13g0172 743 Gene3D Phosphorylase Kinase; domain 1 386 494 - -
HCH13g0172 743 FunFam Wall-associated receptor kinase 2 387 494 - -
HCH13g0172 743 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 36 700 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
HCH13g0172 743 CDD STKc_IRAK 426 691 - -
HCH13g0172 743 FunFam Fibrillin 2 288 331 - -
HCH13g0172 743 ProSitePatterns Calcium-binding EGF-like domain signature. 293 318 IPR018097 GO:0005509(InterPro)
HCH13g0172 743 Pfam Calcium-binding EGF domain 293 325 IPR049883 -
HCH13g0172 743 Gene3D Transferase(Phosphotransferase) domain 1 495 709 - -
HCH13g0172 743 CDD EGF_CA 293 328 - -
HCH13g0172 743 SUPERFAMILY Protein kinase-like (PK-like) 405 706 IPR011009 -
HCH13g0172 743 Pfam Protein kinase domain 420 685 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0172 743 Coils Coil 681 701 - -
HCH13g0172 743 SMART egf_5 296 336 IPR000742 -
HCH13g0172 743 SMART egf_5 244 292 IPR000742 -
HCH13g0172 743 ProSiteProfiles EGF-like domain profile. 293 336 IPR000742 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0172 HCH-Chr13:1161633 HCH13g0175 HCH-Chr13:1183446 6.00E-234 dispersed
HCH8g1155 HCH-Chr8:47169559 HCH13g0172 HCH-Chr13:1161633 2.00E-63 dispersed
HCH13g0172 HCH-Chr13:1161633 HCH13g0173 HCH-Chr13:1166771 3.30E-264 tandem
HCH12g1384 HCH-Chr12:35632093 HCH13g0172 HCH-Chr13:1161633 8.60E-204 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81153 PF00069 Pkinase 2.00E-50 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0172 - - - 0.0