Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0173 ATGGTAGTATTATTGTTGATAGCCATATTATTATCATCCGCCGCAACCCCAGCTTCTTCACAATCTCAAGCCTTACCCGGCTGCGATGAATGGTGTGGAAACTTACGAATTCCATATCCATTTGGCATGAAACCAGGCTGCTATCTCGATGAATCTTTCTTCATTGCATGCAACAAAACTCACTACAATCCACCACTTCCATTTCTCGCCGATTTCAAAAGCGATATCAACGTTACAAATATATCAATCTCCGGCGAGGCTTACGTCATGCAATTCGCATCAAGAGATTGCTACACACAAAATGGTTTTGATATTTCAGTCACAGCCAGTCTCGACGTGCCAACTTTCTTCATTTCTCATACGAAAAACAAATTCACAGTCCTTGGCTGTGATACTTTTGCTTATATTCATGGAGATCTTCCTGGCAGCCGTTACAGAAGTGGATGCATGTCTTTATGTGATAATATTACAGATGTAAGAGATGGGTCGTGTTCTGGAAGTGGTTGCTGTCAACTGGAAATTCCAAATGGGCTGAGGAATTTGATGGTGGAAGTTAAGAGTTTTGATAATCATACGAATGTTCTGAGTTTTAATCCGTGTGGTTATGCATTTGTGGTTGAAGAAAAAGAGTTTAGATTTTCTTCGAGGTATATAAGGAATTTTCCAGAAGAGAGAGTTCCATTGGTGCTTGATTGGGCAATTAAGAATGATACTTGTTTAGAAGCGGAGGATAAAAGCAAATGTATATGTGGAAGAAATAGTAGAAAGATGAACTTCTCTGATAATGGATCTGAATATCGTTGCCAATGCTTGGAAGGTTATGAAGGCAATCCATATCTCCCTCAAGGCTGTCAAGATATAGATGAATGCAAGGATGAAAAACTCCATGATTGCAGATACGAGTGTGTTAACACAGTGGGAAACTATACCTGTAATTGTCCCAAGGATCATAAAGGAGATGGTAGACGTGGAGGAGAAGGTTGCACCAGAAACTCCAAGTCTTATATCCAAATCATTATTGGAATTAGTGTAGGCGTTACAGTTTTACTGATTGGCAGTGCATGGATCTATTTGGGTTATAGAAAGTGGAAATTTATCAAACTGAAAGAGAAGTTTTTTGAGAAAAATGGTGGTTTGATGCTTCAACAACATCTTTCCAAATGGCAAGGAAGTAATGAAATGGTCAAGATTTTCACTCAAGAAGAGCTTAAAAAAGCCACAAGCAACTATGATGAAAGTGCAGTTGTAGGCAAAGGTGGCTATGGAACTGTTTATAAAGGAGTTTTGGAAGATGGTTTAACAGTTGCAATCAAGAAATCAAAACTGATAGACCAATCCCAAATTGACCAATTCATTAATGAAGTCATTGTTCTTTCTCAAATCAACCATAGAAATGTAGTAAGGCTTTTAGGGTGTTGTTTGGAAACAGAAGTTCCATTGCTAGTTTATGAATACATCACAAATGGAACTCTCTTTGATCATATCCATAACAAAACCAAAGCTATTTCCCTCTCATGGGAAGCTCGCTTGAGAATTGCTTCAGAAACTGCAGGTGTTCTTTCTTATCTGCATTCTTCAGCTTCTACTCCTATCATCCACAGAGATATCAAGCCGACGAATATACTTTTAGACGGCAACTACACCGCAAAAGTATCCGATTTCGGCGCTTCAAAATTAGTTCCTTTGGATCAAACGGACCTATCTACCATGGTGCAAGGAACTCTCGGATATTTGGATCCGGAATACTTGTTGACAAGTGAATTGACAGAGAAGAGCGATGTTTATAGCTTCGGAATCGTGCTCCTCGAGCTACTAACTGGGAAGAAGGCGGTCTCGTTTGATGGTCCAGAAGCTGAGAGAAACCTTGCAATGCATGTGCTTTGTGCAATGAAAGAAGACCGTTTGAAAGAAGTTGTTGATAAGGGAATAATGACAGAAGCAAACTTTGAGCAGATAAAAGAAGCAGCAAAATTAGCAAACAAGTGTTTGAGAATAAAAGGGGATGAGAGACCAAGCATGAAGGAGGTAGCTATGGAGTTAGAGGGACTTAAATCAATGGTGGAGCATCCATGGATCAATAATAAATCTCAGATAGAAGAGAGGGCTTATTTGTTAGAAGGAACTTCAGATTCAAACCAATTTTTTGAGAGCAGGAGTATAGCTGTGGTGGATGATAGCATGAAGGCTCAGATTATATCAAATGTGTATGATGGAAGATAA 2220 39.14 MVVLLLIAILLSSAATPASSQSQALPGCDEWCGNLRIPYPFGMKPGCYLDESFFIACNKTHYNPPLPFLADFKSDINVTNISISGEAYVMQFASRDCYTQNGFDISVTASLDVPTFFISHTKNKFTVLGCDTFAYIHGDLPGSRYRSGCMSLCDNITDVRDGSCSGSGCCQLEIPNGLRNLMVEVKSFDNHTNVLSFNPCGYAFVVEEKEFRFSSRYIRNFPEERVPLVLDWAIKNDTCLEAEDKSKCICGRNSRKMNFSDNGSEYRCQCLEGYEGNPYLPQGCQDIDECKDEKLHDCRYECVNTVGNYTCNCPKDHKGDGRRGGEGCTRNSKSYIQIIIGISVGVTVLLIGSAWIYLGYRKWKFIKLKEKFFEKNGGLMLQQHLSKWQGSNEMVKIFTQEELKKATSNYDESAVVGKGGYGTVYKGVLEDGLTVAIKKSKLIDQSQIDQFINEVIVLSQINHRNVVRLLGCCLETEVPLLVYEYITNGTLFDHIHNKTKAISLSWEARLRIASETAGVLSYLHSSASTPIIHRDIKPTNILLDGNYTAKVSDFGASKLVPLDQTDLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELLTGKKAVSFDGPEAERNLAMHVLCAMKEDRLKEVVDKGIMTEANFEQIKEAAKLANKCLRIKGDERPSMKEVAMELEGLKSMVEHPWINNKSQIEERAYLLEGTSDSNQFFESRSIAVVDDSMKAQIISNVYDGR 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1166771 1169730 + evm.model.ptg000021l.173 HCH13g0173 556678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0173 739 SMART egfca_6 286 329 IPR001881 GO:0005509(InterPro)
HCH13g0173 739 ProSiteProfiles Protein kinase domain profile. 410 692 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0173 739 CDD STKc_IRAK 416 683 - -
HCH13g0173 739 CDD EGF_CA 286 320 - -
HCH13g0173 739 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 693 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
HCH13g0173 739 ProSitePatterns Calcium-binding EGF-like domain signature. 286 311 IPR018097 GO:0005509(InterPro)
HCH13g0173 739 Gene3D Plasmodium vivax P25 domain 229 335 - -
HCH13g0173 739 Gene3D Transferase(Phosphotransferase) domain 1 486 704 - -
HCH13g0173 739 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0173 739 Pfam Wall-associated receptor kinase galacturonan-binding 28 85 IPR025287 GO:0030247(InterPro)
HCH13g0173 739 FunFam Fibrillin 2 281 324 - -
HCH13g0173 739 SMART egf_5 238 285 IPR000742 -
HCH13g0173 739 SMART egf_5 289 329 IPR000742 -
HCH13g0173 739 SMART serkin_6 410 692 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0173 739 SUPERFAMILY Protein kinase-like (PK-like) 392 680 IPR011009 -
HCH13g0173 739 ProSitePatterns Protein kinases ATP-binding region signature. 416 439 IPR017441 GO:0005524(InterPro)
HCH13g0173 739 FunFam Wall-associated receptor kinase 2 486 703 - -
HCH13g0173 739 FunFam Wall-associated receptor kinase 2 380 485 - -
HCH13g0173 739 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 302 313 IPR000152 -
HCH13g0173 739 Gene3D Phosphorylase Kinase; domain 1 382 485 - -
HCH13g0173 739 Pfam Protein kinase domain 410 677 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0173 739 SUPERFAMILY EGF/Laminin 285 321 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0017 HCH-Chr12:129051 HCH13g0173 HCH-Chr13:1166771 3.60E-194 dispersed
HCH12g1384 HCH-Chr12:35632093 HCH13g0173 HCH-Chr13:1166771 1.70E-212 dispersed
HCH12g1420 HCH-Chr12:37624506 HCH13g0173 HCH-Chr13:1166771 2.70E-72 dispersed
HCH12g1421 HCH-Chr12:37710498 HCH13g0173 HCH-Chr13:1166771 4.90E-196 dispersed
HCH13g0173 HCH-Chr13:1166771 HCH13g0175 HCH-Chr13:1183446 1.20E-282 dispersed
HCH13g0172 HCH-Chr13:1161633 HCH13g0173 HCH-Chr13:1166771 3.30E-264 tandem
HCH13g0173 HCH-Chr13:1166771 HCH13g0174 HCH-Chr13:1172120 2.20E-228 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81154 PF00069 Pkinase 6.50E-50 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0173 - - - 0.0