Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0174 ATGGGGTTTGTTCCTTTTATAGGTTTAGTTATCTTAATCCACCATATCCCAATCTTAACATCATCATCAGTAGCAGTAGCAGAAGCTTCATGTTCTGATCACTGTGGAGATCTAGAAATCCCATTTCCTTTCGGCATGAAAGCCGGTTGTTTCGCCGAAGAAAAGTTCTTCATAAACTGCACACCGGATTCATCAAACAGCCCCACAGCCTTGTTAGGAACAGGAAACGTGATAGTTACCAACATATCATTAGAAACAGCTGAAGTTCATGTAAAGCATTTCACTGCTAAAGACTGCTATAATTCTTCAGGTCTAATTTACACTCACAACTTAGCCATGCTCACTGCTCCTTCTTACTTCATTTCCAACACCAAAAACAAATTCACTGCCATTGGTTGTGACACTTTTGCATTTCTTGATGGGGTTCATGGAGATGAAGTATTCAAAACTGGATGTATTACTCAATGTAGTGATCTTCCTGATGTGAAAAATGGATCTTGTTCTGGATTGGGTTGTTGCCAAGTTGAGATTCCTGATGGTATTAAGAATATTAATGTTTCAGTTTTTAGTTTTGGGAATCATACAACAGTTGAGAGATTTAATCCTTGTGGATATGCGTTTGTGTCTCGAGACGATTCGTTTAATTTTTCGACTAGTTATCTGAGAGAATATGAAGCTATGGTTCCAATTGTGTTGGATTGGGCTGTGGGGATTGGAAGTTGTAGTGATGATGATAATTCAAATGAAACTGGTTGTTTGTGTGGGGAGAATAGTGATCATTTTGATTCTGTTTATAATCCTTTTGAGTATGTTTGCAAGTGCAGGAATGGTTATGGTGGAAATCCTTATACTCCTCGTGGTTGCCAAGACATCGATGAGTGCAAGGATCCAAATCACATGCATAATTGTACAGAAAACAGTTCATGCAAAAACATGAATGGAAGTTTTACATGTGATTGCAACGAGGGTTTTCATCAAGTAAAAAACATTTGCATTATGAATGAGCCACCAAGAAAATCAGACAAAGTCATTCCCATCACTGTGGGATTTGGTGTTGGCATTGTTGCATTGATAATTTGCAGTTCATGGGCTTTCTTAGCTTACAAGAAATGGAAACTAATAAAGCTCAAGGAGAAATTCTTCAAACAAAATGGAGGTCTTATGTTACAACAACAACTCATTTCTCATGGAGATCATGGTTCCACTTCCACAGATATTGCTAAAATCTTCACAGAAGAAGAGCTAAAGAAAGCGACGAACAATTTCGACGAAAGCACGGTGGTCGGAAAAGGAGGTTACGGTACTGTCTTCAAAGGAACCCTGAGAGATGGAAGAGTTGTTGCAATCAAGAAATCGAAAGTTGTTGATCAAAGCCAAATTGAGCAGTTCATTAATGAAGTCATTGTTCTTTCCCAAATCAACCATAGAAATGTGGTTAAGCTTCTAGGTTGTTGTTTGGAGACACAAGTTCCATTACTTGTTTATGAATTCGTCACTAACGGCACTCTTTACGATCATCTCCAACGCGGCGTAGCTACGATATCTTGGGGAATTCGACTACGAGTAGCGTCAGAAGCTGCGGGAGTTCTATCTTATCTGCACTCTTCAGCTTCCATTCCCATCATTCATAGAGATGTAAAGTCTACAAATATACTATTAGATGAAACCTTCACTGCGAAAGTTTCCGATTTCGGTGCCTCGAGACTGGTTCCGTTAGATCAAGATCAATTGACGACAATGGTGCAAGGAACACTTGGATATCTAGATCCGGAATACTTTCTTACAGGTCAAATGACCGAAAAGAGTGATGTTTATAGCTTCGGAGTTGTACTGGTGGAGTTGCTCACGGGATTGAAGGCGGTTTGCTTCGAGAGGCGAGAGGAGGAGAGAAACCTAGCAATGTATTTCCTTACGGCCATGAAAGAAGACAGATTGATACAAGTTATAGATGATTGTGTAGTGAATGATGCAAGAATGGAGCATATTATAGAAGTGGCTGAACTAGCAATGATGTGTTTGAGATTGAAAGGAGAAGAAAGGCCATTCATGAAGGATATATCCAATGAGTTACAGGGTTTGAGAATGGTGATGGATGAGCATCCATGGAATAAGAATGAATCAAATTTTGAAGAATCAGAGTACCTGCTTCATGGAAATAGAACATTGAATGTTGAGGCCTACGATAGTTATAGTGGAAGTGCTGCATATGATAGCATGAAGAATCATGTGATGTTACCAGATCGTAGTGGAAGATGA 2256 39.27 MGFVPFIGLVILIHHIPILTSSSVAVAEASCSDHCGDLEIPFPFGMKAGCFAEEKFFINCTPDSSNSPTALLGTGNVIVTNISLETAEVHVKHFTAKDCYNSSGLIYTHNLAMLTAPSYFISNTKNKFTAIGCDTFAFLDGVHGDEVFKTGCITQCSDLPDVKNGSCSGLGCCQVEIPDGIKNINVSVFSFGNHTTVERFNPCGYAFVSRDDSFNFSTSYLREYEAMVPIVLDWAVGIGSCSDDDNSNETGCLCGENSDHFDSVYNPFEYVCKCRNGYGGNPYTPRGCQDIDECKDPNHMHNCTENSSCKNMNGSFTCDCNEGFHQVKNICIMNEPPRKSDKVIPITVGFGVGIVALIICSSWAFLAYKKWKLIKLKEKFFKQNGGLMLQQQLISHGDHGSTSTDIAKIFTEEELKKATNNFDESTVVGKGGYGTVFKGTLRDGRVVAIKKSKVVDQSQIEQFINEVIVLSQINHRNVVKLLGCCLETQVPLLVYEFVTNGTLYDHLQRGVATISWGIRLRVASEAAGVLSYLHSSASIPIIHRDVKSTNILLDETFTAKVSDFGASRLVPLDQDQLTTMVQGTLGYLDPEYFLTGQMTEKSDVYSFGVVLVELLTGLKAVCFERREEERNLAMYFLTAMKEDRLIQVIDDCVVNDARMEHIIEVAELAMMCLRLKGEERPFMKDISNELQGLRMVMDEHPWNKNESNFEESEYLLHGNRTLNVEAYDSYSGSAAYDSMKNHVMLPDRSGR 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1172120 1175175 + evm.model.ptg000021l.174 HCH13g0174 556679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0174 751 SMART egfca_6 290 332 IPR001881 GO:0005509(InterPro)
HCH13g0174 751 Gene3D Transferase(Phosphotransferase) domain 1 498 713 - -
HCH13g0174 751 ProSiteProfiles EGF-like domain profile. 290 332 IPR000742 -
HCH13g0174 751 CDD STKc_IRAK 428 693 - -
HCH13g0174 751 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 309 320 IPR000152 -
HCH13g0174 751 CDD EGF_CA 290 325 - -
HCH13g0174 751 SUPERFAMILY Protein kinase-like (PK-like) 403 690 IPR011009 -
HCH13g0174 751 Pfam Wall-associated receptor kinase galacturonan-binding 31 92 IPR025287 GO:0030247(InterPro)
HCH13g0174 751 SMART serkin_6 422 671 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0174 751 ProSitePatterns Serine/Threonine protein kinases active-site signature. 541 553 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0174 751 ProSitePatterns EGF-like domain signature 2. 318 331 IPR000742 -
HCH13g0174 751 Gene3D Plasmodium vivax P25 domain 213 338 - -
HCH13g0174 751 Pfam Calcium-binding EGF domain 290 329 IPR049883 -
HCH13g0174 751 SUPERFAMILY EGF/Laminin 289 328 - -
HCH13g0174 751 ProSitePatterns Calcium-binding EGF-like domain signature. 290 318 IPR018097 GO:0005509(InterPro)
HCH13g0174 751 ProSitePatterns Protein kinases ATP-binding region signature. 428 451 IPR017441 GO:0005524(InterPro)
HCH13g0174 751 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 27 706 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
HCH13g0174 751 Gene3D Phosphorylase Kinase; domain 1 394 497 - -
HCH13g0174 751 FunFam Wall-associated receptor kinase 2 388 497 - -
HCH13g0174 751 FunFam Wall-associated receptor kinase 2 498 714 - -
HCH13g0174 751 SMART egf_5 240 289 IPR000742 -
HCH13g0174 751 SMART egf_5 293 332 IPR000742 -
HCH13g0174 751 Pfam Protein tyrosine and serine/threonine kinase 426 690 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0174 751 FunFam Fibrillin 2 285 331 - -
HCH13g0174 751 ProSiteProfiles Protein kinase domain profile. 422 703 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0174 HCH-Chr13:1172120 HCH8g0250 HCH-Chr8:12147059 2.90E-103 dispersed
HCH13g0173 HCH-Chr13:1166771 HCH13g0174 HCH-Chr13:1172120 2.20E-228 tandem
HCH13g0174 HCH-Chr13:1172120 HCH13g0175 HCH-Chr13:1183446 1.00E-193 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81155 PF07714 PK_Tyr_Ser-Thr 3.90E-45 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0174 - - - 0.0