Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0175 ATGTTCACTATTTCCGATACCGAAAACCAATTCAACGTCATCGGCTGCGATACTTACGCTTATATTTACGGCAAACTCGATGGCAACGATTACACAACCGGGTGCATGGCTTTATGTAATAGTAATAGCACTCTAAAAGACGGCTCTTGCTCTGGCAACGGGTGTTGTCAATTGGGAATTCCAAAAGGCTTGAGGAATTTGGAGTTGGAAGTTAGAAGCTTTGAAAACCATACTAAAGTCCTGGAATTCAACCCATGTGGCTATGCTTTCGTAATCGAAAAAGACGGGTTTCAGTTTTCCAAAAGCTTTATTGAGAATTTTCCAGAAGAGAAAGTTCCTCTGGTGCTTGATTGGGCTATCAGTAATGATACTTGCTTGAATTCTGAGGATAAAATCAATTGCATATGTGGACCAAACAGCATAAGAATTGATATGGGATCATCTGAATATCGTTGCAAGTGCTTGGAAGGTTATGAGGGAAATCCATATCTTACTCACCAAGGTTGTCGAGATATAGATGAATGTAAGGATGAAAGATCCAATGACTGCATAGACAAGAAGTGGGGGTGTGTAAACACACCTGGAAGCTATACATGTAATTGTCCTAAGAATTATGAAGGAGATGGTAAAAGTAAAGGAAAAGGTTGCACCAGAAACTCCAGGTCTTACATTCAGATCATCATTGGGATTGGTGTGGGCCTCACAGTTTTACTGATTGGAAGTTCTTGGTCATTCTTGGGTTACAAGAAATGGAGGTTCATCAAACTCAAACAGAAGTTTTTTGAGAAAAATGGAGGTTTGATACTTCAACAACATCTTTTTAGAAGGCAAGGACCCACTGATATGGTCAAAATTTTCCCTCATGAAGAGCTTAAGAAAGCTACTAGCAACTTTGATGACAGTACAGTTGCAGGCAAAGGTGGATATGGTACTGTTTATAAAGGAGTTTTAGAAGATGGTTTAACAGTTGCAATCAAGAAATCAAAACTGATAGACCAATCTCAAACTGACCAATTCATTAATGAAGTCATTGTTCTTTCCCAAATCAACCATAGAAATGTAGTAAGGCTTTTAGGGTGTTGTTTGGAAACAGAAGTTCCATTGCTAGTTTATGAGTTCATTCCAAATGGGACTCTCTTTGAGCACATCCACAACAAAACCAAAGCTATTTCCCTCACATGGGAAGTTCGCTTGAGAATTGCTAAAGAAACTGCAAGTGTCCTTTCTTACTTGCATTCTTCAGCTTCTACTCCTATCATCCATAGAGATATCAAGTCGACAAATATACTTTTAGATCATACATACACCGCAAAAGTCTCCGATTTCGGCGCTTCGAAGCTGGTTCCTTTGGATCAAACTCAGCTATCGACGATGGTGCAAGGAACTCTCGGATATTTGGATCCGGAATACTTGCTAACAAGTGAACTCACAGAGAAGAGCGATGTTTACAGCTTCGGAATCGTGCTTCTCGAGCTCCTAACTGGGAAGAAAGCAGTCTCTTTTGAGGGTCCAGAAGCTGAGAGAAATCTAGCAATGTATGTGCTTTGTGCAATGAAAGAAGATCATTTGGAACAAGTTGTTGATAAGGGAATAGTGACGGAAGCAAACTATGAGCAGATAAAAGAAGCAGCAAAATTAGCAAAGAAGTGTTTGAGAATAAAAGGGGATGAGAGACCGAGCATGAAGGAGGTAGCTATGGAGTTAGAGGGTCTTAAATCAATGGTACAGCATCCATGGGTTAACAATGATGTAATGAATACGGAAAAGATGACTTATCTGCTGCATGAAACTTCAGAATCAAGCCAGTTTGTTGCCAATGATAGCATGACAGCAACACAGATTATATCACAGCTCCCTGATGGAAGATAA 1869 39.81 MFTISDTENQFNVIGCDTYAYIYGKLDGNDYTTGCMALCNSNSTLKDGSCSGNGCCQLGIPKGLRNLELEVRSFENHTKVLEFNPCGYAFVIEKDGFQFSKSFIENFPEEKVPLVLDWAISNDTCLNSEDKINCICGPNSIRIDMGSSEYRCKCLEGYEGNPYLTHQGCRDIDECKDERSNDCIDKKWGCVNTPGSYTCNCPKNYEGDGKSKGKGCTRNSRSYIQIIIGIGVGLTVLLIGSSWSFLGYKKWRFIKLKQKFFEKNGGLILQQHLFRRQGPTDMVKIFPHEELKKATSNFDDSTVAGKGGYGTVYKGVLEDGLTVAIKKSKLIDQSQTDQFINEVIVLSQINHRNVVRLLGCCLETEVPLLVYEFIPNGTLFEHIHNKTKAISLTWEVRLRIAKETASVLSYLHSSASTPIIHRDIKSTNILLDHTYTAKVSDFGASKLVPLDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELLTGKKAVSFEGPEAERNLAMYVLCAMKEDHLEQVVDKGIVTEANYEQIKEAAKLAKKCLRIKGDERPSMKEVAMELEGLKSMVQHPWVNNDVMNTEKMTYLLHETSESSQFVANDSMTATQIISQLPDGR 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1183446 1186761 + evm.model.ptg000021l.175 HCH13g0175 556680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0175 622 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 2 581 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
HCH13g0175 622 Pfam Protein kinase domain 302 571 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0175 622 Gene3D Transferase(Phosphotransferase) domain 1 374 592 - -
HCH13g0175 622 SUPERFAMILY EGF/Laminin 171 210 - -
HCH13g0175 622 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 190 201 IPR000152 -
HCH13g0175 622 SMART egfca_6 171 217 IPR001881 GO:0005509(InterPro)
HCH13g0175 622 SMART serkin_6 298 580 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0175 622 Pfam Calcium-binding EGF domain 171 212 IPR049883 -
HCH13g0175 622 ProSiteProfiles EGF-like domain profile. 171 211 IPR000742 -
HCH13g0175 622 ProSiteProfiles Protein kinase domain profile. 298 580 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0175 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0175 622 SUPERFAMILY Protein kinase-like (PK-like) 280 594 IPR011009 -
HCH13g0175 622 FunFam Fibrillin 2 166 212 - -
HCH13g0175 622 Gene3D Phosphorylase Kinase; domain 1 268 373 - -
HCH13g0175 622 Gene3D Laminin 143 211 - -
HCH13g0175 622 FunFam Wall-associated receptor kinase 2 374 591 - -
HCH13g0175 622 CDD EGF_CA 171 208 - -
HCH13g0175 622 ProSitePatterns Calcium-binding EGF-like domain signature. 171 199 IPR018097 GO:0005509(InterPro)
HCH13g0175 622 CDD STKc_IRAK 305 571 - -
HCH13g0175 622 FunFam Wall-associated receptor kinase 2 268 373 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1399 HCH-Chr12:36564272 HCH13g0175 HCH-Chr13:1183446 1.80E-10 dispersed
HCH13g0172 HCH-Chr13:1161633 HCH13g0175 HCH-Chr13:1183446 6.00E-234 dispersed
HCH13g0173 HCH-Chr13:1166771 HCH13g0175 HCH-Chr13:1183446 1.20E-282 dispersed
HCH13g0175 HCH-Chr13:1183446 HCH8g0251 HCH-Chr8:12225521 2.50E-100 dispersed
HCH13g0174 HCH-Chr13:1172120 HCH13g0175 HCH-Chr13:1183446 1.00E-193 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81156 PF00069 Pkinase 4.00E-49 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0175 - - - 0.0