Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0185 ATGTTATCTAGGGATCCTAACGCCCTCTTCAGTGGCGGCGGTATCAGTTTTCTCACTGGGAATCGTACTGGAAAGTTCAGCTATGGGTATTCTAGTTTCAAGGGAAAAAGAGCTTCGATGGAGGACTTTTTTGAGACAAGAATTTCTGAAGTTGACGGGCAGATGGTTGCTTTTTTTGGTGTTTTTGATGGTCATGGAGGTTCCCGAACAGCAGAATACCTTAAGCTCCATCTTTTCAAGAATTTAAGTAGCCATCCAGCTTTTTTCAAAGATACGAAGACTGCTATAGTTGAGACTTTTAGACAGACAGATGCAGATTATATTAATGAAGATAAGGGGGAGCAAAAAGATGCTGGATCTACTGCATCAACTGCTGTCCTGTTAGGGGACCGTCTTCTTGTCGCAAATGTTGGTGATTCCAGAGTAGTCGCTTCTAGAGCTGGTTCAGCTATTCCTCTGTCTATTGATCACAAACCTGATAGATCAGATGAACGAAAGAGGATTGAACAAGCTGGAGGTTTCATTGTTTGGGCAGGAACGTGGAGGGTTGGTGGTGTTCTTGCAGTCTCGCGTGCCTTTGGGGATAAGCTTCTCAAACCCTATGTTGTTGCTGAACCAGAAATTCAGGAAGAAGAAATTGATGGCGTAGATTTCATCATTATTGCCAGTGATGGTCTTTGGAATGTCATATCAAATGAGGAGGCTGTAACATTGGTGCAACACATACAAGAGGCAGAAGTGGCATCAAAAAAACTAATCGAAGAAGCCTATGCACGAGGAAGTTCTGACAACATTACATGTGTCATTGTACGATTTGATTTATCGTAA 828 42.39 MLSRDPNALFSGGGISFLTGNRTGKFSYGYSSFKGKRASMEDFFETRISEVDGQMVAFFGVFDGHGGSRTAEYLKLHLFKNLSSHPAFFKDTKTAIVETFRQTDADYINEDKGEQKDAGSTASTAVLLGDRLLVANVGDSRVVASRAGSAIPLSIDHKPDRSDERKRIEQAGGFIVWAGTWRVGGVLAVSRAFGDKLLKPYVVAEPEIQEEEIDGVDFIIIASDGLWNVISNEEAVTLVQHIQEAEVASKKLIEEAYARGSSDNITCVIVRFDLS 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1245736 1249781 - evm.model.ptg000021l.185 HCH13g0185 556690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0185 275 FunFam probable protein phosphatase 2C 59 19 275 - -
HCH13g0185 275 CDD PP2Cc 26 272 IPR001932 -
HCH13g0185 275 ProSitePatterns PPM-type phosphatase domain signature. 58 66 IPR000222 GO:0043169(InterPro)
HCH13g0185 275 Pfam Protein phosphatase 2C 28 265 IPR001932 -
HCH13g0185 275 ProSiteProfiles PPM-type phosphatase domain profile. 27 272 IPR001932 -
HCH13g0185 275 PANTHER PROTEIN PHOSPHATASE 27 270 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH13g0185 275 SMART PP2C_4 17 270 IPR001932 -
HCH13g0185 275 Gene3D - 21 274 IPR036457 -
HCH13g0185 275 SUPERFAMILY PP2C-like 23 273 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0442 HCH-Chr12:2557650 HCH13g0185 HCH-Chr13:1245736 1.00E-96 dispersed
HCH13g0185 HCH-Chr13:1245736 HCH7g0133 HCH-Chr7:899353 3.70E-48 dispersed
HCH13g0185 HCH-Chr13:1245736 HCH12g1058 HCH-Chr12:7936003 2.90E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0185 K17506 - rcu:8270424 486.108