Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0189 ATGGTAACATCGGGGCCACCTACTCCTATCGGTGGTGGAACTCAGTCCGTTGCGCCTTCGCTTTTGCGATCTAATTCTGGATTGCTGGGAGTTCAAGCTGGAATGTTGCCTTCTCAGACGGCTTTCTCTTCGCTTGTATCGCCACGCAGTCAGTTCAATAATATGAATATGCTTGGTAATATGTCCAATGTGTCATCTCTCCTTAATCAATCATTTGGAAATGGGGTTCCTAATTCTGGACTTCAAGAGCCTGGTGGTAGCCAGCATGGTGGTATTGATCCTGGTGCGGAGTCGGACCCTCTTTCAAGTGTTGGCAATGGAATGAGCTTTAATAATCCTTCGTCATCATTTGGAGCATCGAATATGACAAACCCCATTTCATCCGTTCAAGGTCAGAATCAACAATATGCTAATCTTTCTAGTAACCAGATGTTATCAGATCAACAGCAATCCCAACAACTCGAACCTCAGAACTTCCAACATGGTCAACAGTCGATGCAACAGTTTTCTTCACTTCAGAGCAATCAACAACAACAATTTCAAGCAATGCGAGGGGGCTTGGTCGGTGTCGGGCCTGTAAAGTTAGAGCCTCAAGTGACCAACAATGATCAACATGGACAGCAGCAACAGCAGCAACAGCAGCAGCAACAACAACATTTGCAGACATTGAGAAATCTTGGTCCTTTGAAAATGGAATCACAACGAATTCAATCTTTGAGAGGTATGGCGCCAGTAAAATTGGAACCCCAACAATCAGATCAGTCATTATTTCTGCATCAGCAGCAACAACAGCAACAGCAGCAACAACAACAGCAACAACAGCAGCAGTTTCTGCACATGTCTAGACAATCTACTCAAGCTGCTGCAGCCCAAATTAGTCTTTTGCAACAACAAAGATTTTTGCAATTGCAACAACAGCATCAGCATCAGCAACAGCAACAGCATCTATTAAAAACGATGCCTCCTCAACGGCCGCAATTGCAACAACATTTTCAACAGCAGAATCTGTCATTGAGATCTCCTGCAAAACCAGCATATGAACCCGGGATGTGTGCTCGGCGTCTGACTCATTACATGTATCAGCAACAACATAGACCTGAAGATAATAACATAGATTTTTGGAGGAAATTTGTTACCGAATACTTTGCACCTCATGCCAAAAAGAAGTGGTGTGTTTCCATGTACGGAAGTGGACGACAAACAACTGGAGTTTTTCCTCAGGATGTATGGCACTGTGAAATATGCAATCGCAAGCCTGGACGTGGTTTTGAAGCAACTGCCGAAGTTCTTCCCAGGCTTTTTAAGATCAAGTATGAAAGTGGTACCTTGGAAGAACTACTCTATCTTGACATGCCTCGTGAATATCATAATGCATCCGGTCAGATTGTCCTGGATTATGCGAAAGCAATACAGGAAAGTGTTTTTGAGCAACTTCGTGTTGTTCGTGATGGCCAACTTCGAATAGTTTTTTCTCCAGACCTCAAGATATGTTCATGGGAATTCTGTGCTCGACGCCATGAAGAACTTATCCCTAGGAGATTATTGATACCTCAGGTTAGCCAACTTGGTGCAGCAGCTCAAAAGTACCAGTCTGCCATTCAAAATGCATCATCCAACTTATCGGCTTCTGATTTGCAAAATAATTGCAACATGTTTGTGGCATCAGCTCGACAATTAGCTAAAGCCTTGGAAGTTCCATTGGTAAATGACTTGGGATACACAAAGAGATATGTCCGTTGTCTTCAGATATCCGAAGTGGTTAATAGCATGAAGGACTTGATTGATTACAGCAAAGAAACAGGGGTTGGGCCAATGGATAGTCTAGCCAAGTTTCCTCGGAGGACGAGTCTTTCACCCGGGTTCACAAATCAAGGCCAACTCACAGAGGACCAAAAGCAGCAGCAACATCAACAAGGTATAGCCCAGAACTCAAGTAACAGCCAAAGTGCTGTCCAGCCTTCTGCAGTGCAACTTACAGCTAACAATGGTGTGACCAGTGTAAATAGCACCGTCAACCAAGCTTCAACGTCAAACTCAGCGAGCACCATTGTTGGGCTACTTCATCAGAATTCTATGAACTCCAGGCAGCAGAGTTCTATGGCTAATGCTAGCAGTCCGTATGGGGGAAATTCAGTTCAAGTTCCATCTCCCGGTCCTTCCTCTACAATGCCACCTTCACAACCGAACTCATCTACATTCCAGTCACCAACTCCATCATCCAACAATCTTTCACAACCAACTCATTCTGCTGCGAAGAATGCCAATCAAATGAGTGCAGCTAATTCTCCTGCAAATATGCAGCAACCTGCATTATCTGGTGAGGCCGATCCTAGTGATACTCAGTCGTCTGTACAAAAGATCTTACAGGAGATGATGATGTCCAACCATATTAATGTCCCGGCTAGTATGGTTGGACTGGGTAATGATATGAAAAATGTGAATGGGGTCCTGCCTACAAGCAATACAGGTCTCAACAATGGCAATGGTCTGGTGGGAAATGGAACAACCAATGGTGGCTCAGGCATGGGAGGTGGAGGATATGGAGCAATGGGAGGTGGGCTTGGGCAGTCTTCCATGGTTAATGGAATGAGGTCAGCGTTGGGGAATAATTCCGTAATGAACGGAAGAATAGGGATGGCATCGCTGGCTCGAGAACAAAGCATGAATAATCAACCACAGGATTTGGGAAACCCGCTTCTAAGTGGACTAGGAGCTGTTAATGGCTTTAGTAATCTTCAATTCGACTGGAAGCCATCGCCATAA 2763 44.59 MVTSGPPTPIGGGTQSVAPSLLRSNSGLLGVQAGMLPSQTAFSSLVSPRSQFNNMNMLGNMSNVSSLLNQSFGNGVPNSGLQEPGGSQHGGIDPGAESDPLSSVGNGMSFNNPSSSFGASNMTNPISSVQGQNQQYANLSSNQMLSDQQQSQQLEPQNFQHGQQSMQQFSSLQSNQQQQFQAMRGGLVGVGPVKLEPQVTNNDQHGQQQQQQQQQQQQHLQTLRNLGPLKMESQRIQSLRGMAPVKLEPQQSDQSLFLHQQQQQQQQQQQQQQQQQFLHMSRQSTQAAAAQISLLQQQRFLQLQQQHQHQQQQQHLLKTMPPQRPQLQQHFQQQNLSLRSPAKPAYEPGMCARRLTHYMYQQQHRPEDNNIDFWRKFVTEYFAPHAKKKWCVSMYGSGRQTTGVFPQDVWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTLEELLYLDMPREYHNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQSAIQNASSNLSASDLQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSKETGVGPMDSLAKFPRRTSLSPGFTNQGQLTEDQKQQQHQQGIAQNSSNSQSAVQPSAVQLTANNGVTSVNSTVNQASTSNSASTIVGLLHQNSMNSRQQSSMANASSPYGGNSVQVPSPGPSSTMPPSQPNSSTFQSPTPSSNNLSQPTHSAAKNANQMSAANSPANMQQPALSGEADPSDTQSSVQKILQEMMMSNHINVPASMVGLGNDMKNVNGVLPTSNTGLNNGNGLVGNGTTNGGSGMGGGGYGAMGGGLGQSSMVNGMRSALGNNSVMNGRIGMASLAREQSMNNQPQDLGNPLLSGLGAVNGFSNLQFDWKPSP 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1266322 1271904 - evm.model.ptg000021l.189 HCH13g0189 556694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0189 920 MobiDBLite consensus disorder prediction 616 653 - -
HCH13g0189 920 Pfam LIM-domain binding protein 354 608 IPR029005 -
HCH13g0189 920 MobiDBLite consensus disorder prediction 69 128 - -
HCH13g0189 920 MobiDBLite consensus disorder prediction 142 179 - -
HCH13g0189 920 MobiDBLite consensus disorder prediction 197 219 - -
HCH13g0189 920 MobiDBLite consensus disorder prediction 693 717 - -
HCH13g0189 920 PANTHER LIM DOMAIN-BINDING PROTEIN 238 911 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
HCH13g0189 920 MobiDBLite consensus disorder prediction 69 85 - -
HCH13g0189 920 MobiDBLite consensus disorder prediction 725 783 - -
HCH13g0189 920 MobiDBLite consensus disorder prediction 693 783 - -
HCH13g0189 920 MobiDBLite consensus disorder prediction 192 219 - -
HCH13g0189 920 MobiDBLite consensus disorder prediction 604 653 - -
HCH13g0189 920 MobiDBLite consensus disorder prediction 102 128 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1197 HCH-Chr11:44282975 HCH13g0189 HCH-Chr13:1266322 5.90E-100 dispersed
HCH13g0189 HCH-Chr13:1266322 HCH5g0778 HCH-Chr5:5962685 8.90E-94 dispersed
HCH12g1402 HCH-Chr12:36766478 HCH13g0189 HCH-Chr13:1266322 3.80E-291 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0189 - - - 0.0