Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0225 ATGGATTTCATTGAAGGAGTTGGAGAAAGTTCTTCTCCGCCTAGAAGCTTCGGAAACTTCTCTTTCCACGATGTAAGGAACGATGTTTATACTCGTTTAGTAGAAACTGGACACGAAGAAGCTCTTTCTAATCCGGAATTTCGTGAACACTTGGATTCTCACTTTAATCGCTTGCCTCCTAGTTATGGGCTTGATGTTAACATGGATAGAGTGGAAGATGTTTTGTTACATCAAAAGCTTCTTGCACTGGCTAAGGATCCAGAAAAGCGGCCTGTTTACCACATTCGCTTTCTGGAGCACATAAGTACTAAATCAGATGGCTATGATGATCAAGAACTAGATAGTATTCTTTTAAATGGATTGGCTTTTGCAGCTGCTGATGGAAGATTTCCACTGTCACACAAGAGAACCAGAGGCAATATCATTGACTTTGAGCCTTGTTCCAAGCTTGAGGACTTAAATTTGGATGTCAAAAAGAACTCGGAGGACAGTGATGGAAGATATCATTTGAAATTTTCAAAAAGGCAGGATATTGCACATGTTCCAATCCACGAAGTGATATTTTCAACTGTTGACAAGCCAAAGCTTCTTAGCCAGCTTTCTGCTTTACTTTCTGATATAGGACTTAATATTCGAGAAGCACATGTGTTTTCAACAACTGATGGCTACTCCTTGGATGTATTTGTGGTGGATGGATGGCCTGTTGAGGAAACTGATGGTTTGTACGAAGCTATGGAGAATGCAGTTGCTAGATATGAGGGGTCGTGGTCTGGCTCTTCACATTCTCATTCAGCAGTCAAGAAAACATTAGATGCCCAGACAAAATCAGAAGATTGGGAAATAGATAGACGGTTACTGAAGATAGGTGAAAGAATTGCATCTGGGTCCTGTGGGGATTTGTATCATGGATTATATCTTGGTCAAGATGTAGCCGTCAAGATATTAAGATCTGAAGATCTAAACGATGATTTAGAGGACGAATTCAGTCAAGAAGTGGCAATTCTCAGGAAGGTCCAGCATAAAAATGTAGTTCATTTCATTGGTGCTTGCACGAAGTTTCCTCATTTGTGTATTGTAACAGAGTATATGCCTGGAGGGAGCCTTTATGATTACTTGCACAAGAATCATTATGTCTTAAAGCTCTCACAACTGCTGAAGTTTGCTATCGATGTTTGTGAAGGAATGGAATACTTGCATTTAAATAACATTATTCATAGAGACTTGAAGACAGCAAATCTGCTAATGAACGTTCAACACGTTGTAAAGGTGGCAGATTTTGGAGTTGCACGATACCAGAGTCAAGGAGTAATGACTGCAGAGACTGGTACATACAGATGGATGGCGCCTGAGGTAATAAATCATCTGCCATATGATCAGAAAGCAGATATATTCAGTTTTGCGATTGTTTTGTGGGAACTAGTGACAGCAAAGGTTCCTTATGATTCCATGACACCGCTACAAGCTGCTCTTGGAGTAAGACAGGGGCTACGTCCAGATCTTCCTAAGAATGTGCACCCTAAATTGTTGGATTTGATGCAAAGATGTTGGGATGCAGAACCTGTAAATCGGCCTCCTTTTACTGATATAAAAGCTGAACTTGAAAATCTCCTTGAAGAAGTTCAGATGTGTACAAAATATGAGGAAATTCGTGCAGCGGTTAATGGCAGTTGA 1671 40.34 MDFIEGVGESSSPPRSFGNFSFHDVRNDVYTRLVETGHEEALSNPEFREHLDSHFNRLPPSYGLDVNMDRVEDVLLHQKLLALAKDPEKRPVYHIRFLEHISTKSDGYDDQELDSILLNGLAFAAADGRFPLSHKRTRGNIIDFEPCSKLEDLNLDVKKNSEDSDGRYHLKFSKRQDIAHVPIHEVIFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEETDGLYEAMENAVARYEGSWSGSSHSHSAVKKTLDAQTKSEDWEIDRRLLKIGERIASGSCGDLYHGLYLGQDVAVKILRSEDLNDDLEDEFSQEVAILRKVQHKNVVHFIGACTKFPHLCIVTEYMPGGSLYDYLHKNHYVLKLSQLLKFAIDVCEGMEYLHLNNIIHRDLKTANLLMNVQHVVKVADFGVARYQSQGVMTAETGTYRWMAPEVINHLPYDQKADIFSFAIVLWELVTAKVPYDSMTPLQAALGVRQGLRPDLPKNVHPKLLDLMQRCWDAEPVNRPPFTDIKAELENLLEEVQMCTKYEEIRAAVNGS 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1470369 1485302 - evm.model.ptg000021l.225 HCH13g0225 556730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0225 556 PRINTS Tyrosine kinase catalytic domain signature 504 526 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0225 556 PRINTS Tyrosine kinase catalytic domain signature 461 483 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0225 556 PRINTS Tyrosine kinase catalytic domain signature 397 415 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0225 556 PRINTS Tyrosine kinase catalytic domain signature 442 452 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0225 556 PRINTS Tyrosine kinase catalytic domain signature 360 373 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0225 556 SUPERFAMILY ACT-like 184 253 IPR045865 -
HCH13g0225 556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0225 556 Pfam Protein tyrosine and serine/threonine kinase 286 533 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0225 556 Gene3D Phosphorylase Kinase; domain 1 272 363 - -
HCH13g0225 556 PANTHER SERINE-THREONINE PROTEIN KINASE 251 537 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
HCH13g0225 556 SMART serkin_6 286 537 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0225 556 ProSiteProfiles Protein kinase domain profile. 286 537 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0225 556 FunFam Serine/threonine-protein kinase isoform 1 274 364 - -
HCH13g0225 556 Gene3D Transferase(Phosphotransferase) domain 1 364 554 - -
HCH13g0225 556 ProSiteProfiles ACT domain profile. 185 259 IPR002912 -
HCH13g0225 556 SUPERFAMILY Protein kinase-like (PK-like) 271 538 IPR011009 -
HCH13g0225 556 CDD STKc_MAP3K-like 292 533 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0092 HCH-Chr12:490808 HCH13g0225 HCH-Chr13:1470369 6.30E-132 dispersed
HCH12g0372 HCH-Chr12:2125268 HCH13g0225 HCH-Chr13:1470369 4.90E-11 dispersed
HCH13g0225 HCH-Chr13:1470369 HCH13g1320 HCH-Chr13:41142912 5.80E-141 dispersed
HCH13g0225 HCH-Chr13:1470369 HCH7g0439 HCH-Chr7:3248409 3.90E-145 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81158 PF07714 PK_Tyr_Ser-Thr 8.80E-71 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0225 - - - 0.0