Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0227 ATGGATTTAAACTTCACCGCCAGAAAACCGCCACAAACGTCGGCGACAGTAAAAATGGACATAGAACGCATGCCGGAAACTCCACACCGTAGCTCTCTCCACCGCCGTTCTCACTCCGACACCTCTTTCCGTTTCAATAATCTCGATGATCTTCTTCTCTTCGATCCCTCCGACCCCGACTTATCATCTTTCCCTTCTCCCTCTCCCTCTCCCTCTCCATCTCCTATAGAGCCACGCATGGTAGTTGATTCCCCCGCCTTCTTCGGCGTTCATTCCAGAAGCTTGTCTATGGATTCTGACTTCTTCGACGGCTTACGAATGGCCGGAAATGGTAACGACGGTGATTTTCTTGGTGGGAAAACGGCGGTGGAAGAGAAGAAGAAAGCCTTGGAGCCTGATAGGCTTGCTGAGCTTGCTTTAATGGACCCTAAGAGAGCAAAAAGGATTCTTGCGAATCGACAATCTGCGGCGCGGTCGAAGGAGAGGAAAATTCGATACACCAGTGAGTTAGAGAGGAAGGTGCAGATGCTTCAGACAGAAGCAACTTCCCTTTCTGCACAGGTTACTGTTCTACAGAGGGATACCACTGGGTTGACAGCTGAGAATAGGGAACTCAAGCTCAGGCTGCAGGCCATGGAGCAGCAAGCCCATCTGAGGGATGCTCTGAACGAGACACTGAAGGAAGAAGTGCAGCGGCTTAAGATAGCAACCGGCCAACTGCCTATTGCCAATGGCAACTTATTTAACAGAGGGAGACTACCTCCTGAATTCCCAACTCTCCAGCCATCCTTGCATCACTTTGGCTTCCCTCAGAATCAACAACAGCAAGAGCTGCTTCACATGTCTCCGCCTGACTCTCAAGGGTCGGCTCCGTCCGAGCTTCCCGGAGTTTAA 894 51.01 MDLNFTARKPPQTSATVKMDIERMPETPHRSSLHRRSHSDTSFRFNNLDDLLLFDPSDPDLSSFPSPSPSPSPSPIEPRMVVDSPAFFGVHSRSLSMDSDFFDGLRMAGNGNDGDFLGGKTAVEEKKKALEPDRLAELALMDPKRAKRILANRQSAARSKERKIRYTSELERKVQMLQTEATSLSAQVTVLQRDTTGLTAENRELKLRLQAMEQQAHLRDALNETLKEEVQRLKIATGQLPIANGNLFNRGRLPPEFPTLQPSLHHFGFPQNQQQQELLHMSPPDSQGSAPSELPGV 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1497514 1499730 - evm.model.ptg000021l.227 HCH13g0227 556732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0227 297 MobiDBLite consensus disorder prediction 267 297 - -
HCH13g0227 297 Gene3D - 143 196 - -
HCH13g0227 297 SUPERFAMILY Leucine zipper domain 144 196 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g0227 297 SMART brlzneu 140 204 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g0227 297 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 142 205 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g0227 297 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 85 276 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH13g0227 297 MobiDBLite consensus disorder prediction 22 39 - -
HCH13g0227 297 MobiDBLite consensus disorder prediction 1 39 - -
HCH13g0227 297 FunFam Transcription factor VIP1 143 196 - -
HCH13g0227 297 Coils Coil 167 187 - -
HCH13g0227 297 MobiDBLite consensus disorder prediction 58 79 - -
HCH13g0227 297 MobiDBLite consensus disorder prediction 62 78 - -
HCH13g0227 297 Pfam bZIP transcription factor 144 195 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g0227 297 CDD bZIP_plant_RF2 145 194 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g0227 297 MobiDBLite consensus disorder prediction 267 289 - -
HCH13g0227 297 Coils Coil 195 215 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0227 HCH-Chr13:1497514 HCH7g0514 HCH-Chr7:3901214 4.50E-39 dispersed
HCH1g0287 HCH-Chr1:45381096 HCH13g0227 HCH-Chr13:1497514 1.30E-42 transposed
HCH12g1439 HCH-Chr12:38690895 HCH13g0227 HCH-Chr13:1497514 2.50E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32777 PF00170 bZIP_1 6.00E-08 CL0018 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0227 K20557 - csv:101215277 320.857