Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH13g0227 | ATGGATTTAAACTTCACCGCCAGAAAACCGCCACAAACGTCGGCGACAGTAAAAATGGACATAGAACGCATGCCGGAAACTCCACACCGTAGCTCTCTCCACCGCCGTTCTCACTCCGACACCTCTTTCCGTTTCAATAATCTCGATGATCTTCTTCTCTTCGATCCCTCCGACCCCGACTTATCATCTTTCCCTTCTCCCTCTCCCTCTCCCTCTCCATCTCCTATAGAGCCACGCATGGTAGTTGATTCCCCCGCCTTCTTCGGCGTTCATTCCAGAAGCTTGTCTATGGATTCTGACTTCTTCGACGGCTTACGAATGGCCGGAAATGGTAACGACGGTGATTTTCTTGGTGGGAAAACGGCGGTGGAAGAGAAGAAGAAAGCCTTGGAGCCTGATAGGCTTGCTGAGCTTGCTTTAATGGACCCTAAGAGAGCAAAAAGGATTCTTGCGAATCGACAATCTGCGGCGCGGTCGAAGGAGAGGAAAATTCGATACACCAGTGAGTTAGAGAGGAAGGTGCAGATGCTTCAGACAGAAGCAACTTCCCTTTCTGCACAGGTTACTGTTCTACAGAGGGATACCACTGGGTTGACAGCTGAGAATAGGGAACTCAAGCTCAGGCTGCAGGCCATGGAGCAGCAAGCCCATCTGAGGGATGCTCTGAACGAGACACTGAAGGAAGAAGTGCAGCGGCTTAAGATAGCAACCGGCCAACTGCCTATTGCCAATGGCAACTTATTTAACAGAGGGAGACTACCTCCTGAATTCCCAACTCTCCAGCCATCCTTGCATCACTTTGGCTTCCCTCAGAATCAACAACAGCAAGAGCTGCTTCACATGTCTCCGCCTGACTCTCAAGGGTCGGCTCCGTCCGAGCTTCCCGGAGTTTAA | 894 | 51.01 | MDLNFTARKPPQTSATVKMDIERMPETPHRSSLHRRSHSDTSFRFNNLDDLLLFDPSDPDLSSFPSPSPSPSPSPIEPRMVVDSPAFFGVHSRSLSMDSDFFDGLRMAGNGNDGDFLGGKTAVEEKKKALEPDRLAELALMDPKRAKRILANRQSAARSKERKIRYTSELERKVQMLQTEATSLSAQVTVLQRDTTGLTAENRELKLRLQAMEQQAHLRDALNETLKEEVQRLKIATGQLPIANGNLFNRGRLPPEFPTLQPSLHHFGFPQNQQQQELLHMSPPDSQGSAPSELPGV | 297 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 1497514 | 1499730 | - | evm.model.ptg000021l.227 | HCH13g0227 | 556732 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH13g0227 | 297 | MobiDBLite | consensus disorder prediction | 267 | 297 | - | - | |
HCH13g0227 | 297 | Gene3D | - | 143 | 196 | - | - | |
HCH13g0227 | 297 | SUPERFAMILY | Leucine zipper domain | 144 | 196 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH13g0227 | 297 | SMART | brlzneu | 140 | 204 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH13g0227 | 297 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 142 | 205 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH13g0227 | 297 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 85 | 276 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
HCH13g0227 | 297 | MobiDBLite | consensus disorder prediction | 22 | 39 | - | - | |
HCH13g0227 | 297 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
HCH13g0227 | 297 | FunFam | Transcription factor VIP1 | 143 | 196 | - | - | |
HCH13g0227 | 297 | Coils | Coil | 167 | 187 | - | - | |
HCH13g0227 | 297 | MobiDBLite | consensus disorder prediction | 58 | 79 | - | - | |
HCH13g0227 | 297 | MobiDBLite | consensus disorder prediction | 62 | 78 | - | - | |
HCH13g0227 | 297 | Pfam | bZIP transcription factor | 144 | 195 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH13g0227 | 297 | CDD | bZIP_plant_RF2 | 145 | 194 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH13g0227 | 297 | MobiDBLite | consensus disorder prediction | 267 | 289 | - | - | |
HCH13g0227 | 297 | Coils | Coil | 195 | 215 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g0227 | HCH-Chr13:1497514 | HCH7g0514 | HCH-Chr7:3901214 | 4.50E-39 | dispersed | |
HCH1g0287 | HCH-Chr1:45381096 | HCH13g0227 | HCH-Chr13:1497514 | 1.30E-42 | transposed | |
HCH12g1439 | HCH-Chr12:38690895 | HCH13g0227 | HCH-Chr13:1497514 | 2.50E-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32777 | PF00170 | bZIP_1 | 6.00E-08 | CL0018 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH13g0227 | K20557 | - | csv:101215277 | 320.857 |