Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0228 ATGGCAGCTACCAAGTTGAACACCAATCTGGACCAACAAACGACTCTCGAAACCGGCATCAAAGTCGAGGAAGAATTCGACTACACGAAGCGTGCGCAGTGGCTCCGTGCCGCCGTGCTTGGCGCCAACGACGGGCTGGTCTCGACGGCTTCTCTAATGATGGGCGTTGGAGCTGTGAAACAAGACATCAAAGCTATGATACTCACCGGGTTTGCGGGATTGGTCGCTGGGGCTTGTAGCATGGCAATAGGAGAGTTTGTTTCTGTGTACTCGCAATTGGACATTGAAGTGGCTCAAAGGAAAAGAGATAAACAAAGAAGTGGTAATACTATTTTGGATCAAGAAGCTGATCAGAAAGATAGAGATAAATTGCCAAATCCACTTCAAGCAGCAGCAGCTTCAGCTTTGGCTTTCTCTTTAGGAGCAATGGTGCCATTGCTAGCAGCTTCCTTTATAAGGAACTATAAGGTCAGACTTGGGGTGATGGTGGCCGCCGTGACCTTAGCTTTGGTGGCGTTTGGATGGTTGGGTGCTGTCTTAGGGAAAGCGCCGTTGTTTCGGTCCTCCGTGAGGGTGTTGATCGGAGGTTGGTTCGCCATGGCTATAACCTTTGGACTAACTAAGTTAATCGGATCAAGTGGACTGTCTTCTGACTCGTGA 660 49.24 MAATKLNTNLDQQTTLETGIKVEEEFDYTKRAQWLRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIEVAQRKRDKQRSGNTILDQEADQKDRDKLPNPLQAAAASALAFSLGAMVPLLAASFIRNYKVRLGVMVAAVTLALVAFGWLGAVLGKAPLFRSSVRVLIGGWFAMAITFGLTKLIGSSGLSSDS 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1507423 1508082 + evm.model.ptg000021l.228 HCH13g0228 556733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0228 219 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 12 212 IPR008217 GO:0005381(PANTHER)|GO:0005384(InterPro)|GO:0005384(PANTHER)|GO:0006880(PANTHER)|GO:0016020(PANTHER)|GO:0030026(InterPro)|GO:0030026(PANTHER)
HCH13g0228 219 Pfam VIT family 114 207 IPR008217 GO:0005384(InterPro)|GO:0030026(InterPro)
HCH13g0228 219 Pfam VIT family 35 114 IPR008217 GO:0005384(InterPro)|GO:0030026(InterPro)
HCH13g0228 219 CDD Nodulin-21 33 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1713 HCH-Chr4:20952363 HCH13g0228 HCH-Chr13:1507423 1.70E-61 transposed
HCH12g1440 HCH-Chr12:38819917 HCH13g0228 HCH-Chr13:1507423 1.60E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0228 K22736 - gmx:100814343 306.219