Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH13g0234 | ATGTCATTCCGCAGCATAATTCGTGATGTAAGGGATGGATTTGGGAGCTTATCGAGACGTAGTTTTGAGGTGAGGCTGCCAAGCCAGTACAGGGCTAAATCTCATGGACTAGTTGTTCAGTTGCATGACGAACCTCCAATAATCCAGACTAGCCGCTGGGCTAGCCTTCCCCCTGAATTATTGCGCGATGTGGTCAAGAGACTGGAGGCAAGTGAGAGCACTTGGCCTGCCCGTAAAAATGTTGTCGCCTGTGCTGGAGTATGTAGGTCATGGAGGGACATGTGTAAGGAAATTGTCAAAGGTCCTGAGTTATCGGGGAAAATTACCTTCCCCGTCTCCTTGAAGCAGCCTGGGCCCCGTGATGGCATGGTTCAATGCTTTATCAAGAGAAACAAATCTAACTTAACTTATCATCTTTTTCTTTCCCTCAGTCCTGCTCTACTGGTTGAGAATGGGAAATTTCTTCTTTCGGCAAAAAGAACGAGGAGAACTACTTCAACAGAGTATGTGATATCATTGGTTGCTGATGATATATCAAGATCAAGCAGTGGTTATATTGGAAAGCTAAGATCAAATTTTCTGGGAACCAAATTCATCATATACGATACGCAGCCTCCTTACAACAGTAACCAAATTCCACCCCCTGGCCGAAGCCGTAGGTTCTACTCCAAAAAAGTCTCTCCTAAGGTGCCTGCTGGTAGCTACAACATAGCACAAATTGCATACGAGTTAAATGTTTTAGGTACAAGGGGACCACGAAGAATGCAGTGCTCCATGTATTCCATCCCAGTTTCAGCTCTTGAGCCAGGTTGCACTGTTCCAGGCCAGCCTGAGCTCCATCCTCGTCTCCTTGAAGATTCATTTCGAAGCATTTCATTCTCCAAGTCAATTGATCATTCAACTGAGTTCAGCAGTTCCCGCTTCTCGGATGTCTCTGGAATGCTCAAGGAAGATGGTGAGGGAAAGGACCGACCCTTGATTCTTCAGAACAAAGCACCAAGATGGCACGAGCAGTTGCAATGTTGGTGCCTTAATTTTCGAGGTCGGGTGACGGTTGCGTCCGTGAAGAATTTCCAGCTGATTGCCGCAACCACGCCTGCCACCGAACCTCCTGCACCATCACAGCCAACACAGCCTGTCCAACCGGCCCATTCTGACCATGATAAGATAATTCTACAGTTTGGGAAGGTTGGTAAAGACATGTTTACTATGGATTATAGATATCCTTTATCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACCAAATTGGCATGTGAATAG | 1293 | 46.25 | MSFRSIIRDVRDGFGSLSRRSFEVRLPSQYRAKSHGLVVQLHDEPPIIQTSRWASLPPELLRDVVKRLEASESTWPARKNVVACAGVCRSWRDMCKEIVKGPELSGKITFPVSLKQPGPRDGMVQCFIKRNKSNLTYHLFLSLSPALLVENGKFLLSAKRTRRTTSTEYVISLVADDISRSSSGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPPPGRSRRFYSKKVSPKVPAGSYNIAQIAYELNVLGTRGPRRMQCSMYSIPVSALEPGCTVPGQPELHPRLLEDSFRSISFSKSIDHSTEFSSSRFSDVSGMLKEDGEGKDRPLILQNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATTPATEPPAPSQPTQPVQPAHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 430 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 1539533 | 1543171 | + | evm.model.ptg000021l.234 | HCH13g0234 | 556739 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH13g0234 | 430 | ProSitePatterns | Tub family signature 2. | 415 | 430 | IPR018066 | - | |
HCH13g0234 | 430 | SUPERFAMILY | F-box domain | 43 | 96 | IPR036047 | GO:0005515(InterPro) | |
HCH13g0234 | 430 | PANTHER | TUBBY-RELATED | 44 | 429 | - | - | |
HCH13g0234 | 430 | ProSitePatterns | Tub family signature 1. | 346 | 359 | IPR018066 | - | |
HCH13g0234 | 430 | PRINTS | Tubby superfamily signature | 408 | 430 | IPR000007 | - | |
HCH13g0234 | 430 | PRINTS | Tubby superfamily signature | 169 | 185 | IPR000007 | - | |
HCH13g0234 | 430 | PRINTS | Tubby superfamily signature | 387 | 406 | IPR000007 | - | |
HCH13g0234 | 430 | PRINTS | Tubby superfamily signature | 185 | 209 | IPR000007 | - | |
HCH13g0234 | 430 | PRINTS | Tubby superfamily signature | 234 | 261 | IPR000007 | - | |
HCH13g0234 | 430 | PRINTS | Tubby superfamily signature | 328 | 345 | IPR000007 | - | |
HCH13g0234 | 430 | PRINTS | Tubby superfamily signature | 346 | 362 | IPR000007 | - | |
HCH13g0234 | 430 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 430 | IPR025659 | - | |
HCH13g0234 | 430 | Gene3D | - | 48 | 100 | - | - | |
HCH13g0234 | 430 | Gene3D | Tubby Protein; Chain A | 112 | 424 | IPR025659 | - | |
HCH13g0234 | 430 | CDD | F-box_AtTLP-like | 53 | 97 | - | - | |
HCH13g0234 | 430 | Pfam | Tub family | 114 | 425 | IPR000007 | - | |
HCH13g0234 | 430 | FunFam | Tubby-like F-box protein | 48 | 101 | - | - | |
HCH13g0234 | 430 | Pfam | F-box-like | 53 | 96 | IPR001810 | GO:0005515(InterPro) | |
HCH13g0234 | 430 | FunFam | Tubby-like F-box protein | 110 | 430 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0876 | HCH-Chr11:39677143 | HCH13g0234 | HCH-Chr13:1539533 | 4.00E-190 | dispersed | |
HCH13g0234 | HCH-Chr13:1539533 | HCH6g1661 | HCH-Chr6:49522540 | 1.30E-119 | dispersed | |
HCH12g0183 | HCH-Chr12:996414 | HCH13g0234 | HCH-Chr13:1539533 | 5.30E-118 | transposed | |
HCH4g1250 | HCH-Chr4:8572864 | HCH13g0234 | HCH-Chr13:1539533 | 1.10E-11 | transposed | |
HCH12g1446 | HCH-Chr12:39198182 | HCH13g0234 | HCH-Chr13:1539533 | 3.60E-199 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32779 | PF01167 | Tub | 1.60E-114 | CL0395 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH13g0234 | K19600 | - | csv:101203074 | 754.207 |