Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0234 ATGTCATTCCGCAGCATAATTCGTGATGTAAGGGATGGATTTGGGAGCTTATCGAGACGTAGTTTTGAGGTGAGGCTGCCAAGCCAGTACAGGGCTAAATCTCATGGACTAGTTGTTCAGTTGCATGACGAACCTCCAATAATCCAGACTAGCCGCTGGGCTAGCCTTCCCCCTGAATTATTGCGCGATGTGGTCAAGAGACTGGAGGCAAGTGAGAGCACTTGGCCTGCCCGTAAAAATGTTGTCGCCTGTGCTGGAGTATGTAGGTCATGGAGGGACATGTGTAAGGAAATTGTCAAAGGTCCTGAGTTATCGGGGAAAATTACCTTCCCCGTCTCCTTGAAGCAGCCTGGGCCCCGTGATGGCATGGTTCAATGCTTTATCAAGAGAAACAAATCTAACTTAACTTATCATCTTTTTCTTTCCCTCAGTCCTGCTCTACTGGTTGAGAATGGGAAATTTCTTCTTTCGGCAAAAAGAACGAGGAGAACTACTTCAACAGAGTATGTGATATCATTGGTTGCTGATGATATATCAAGATCAAGCAGTGGTTATATTGGAAAGCTAAGATCAAATTTTCTGGGAACCAAATTCATCATATACGATACGCAGCCTCCTTACAACAGTAACCAAATTCCACCCCCTGGCCGAAGCCGTAGGTTCTACTCCAAAAAAGTCTCTCCTAAGGTGCCTGCTGGTAGCTACAACATAGCACAAATTGCATACGAGTTAAATGTTTTAGGTACAAGGGGACCACGAAGAATGCAGTGCTCCATGTATTCCATCCCAGTTTCAGCTCTTGAGCCAGGTTGCACTGTTCCAGGCCAGCCTGAGCTCCATCCTCGTCTCCTTGAAGATTCATTTCGAAGCATTTCATTCTCCAAGTCAATTGATCATTCAACTGAGTTCAGCAGTTCCCGCTTCTCGGATGTCTCTGGAATGCTCAAGGAAGATGGTGAGGGAAAGGACCGACCCTTGATTCTTCAGAACAAAGCACCAAGATGGCACGAGCAGTTGCAATGTTGGTGCCTTAATTTTCGAGGTCGGGTGACGGTTGCGTCCGTGAAGAATTTCCAGCTGATTGCCGCAACCACGCCTGCCACCGAACCTCCTGCACCATCACAGCCAACACAGCCTGTCCAACCGGCCCATTCTGACCATGATAAGATAATTCTACAGTTTGGGAAGGTTGGTAAAGACATGTTTACTATGGATTATAGATATCCTTTATCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACCAAATTGGCATGTGAATAG 1293 46.25 MSFRSIIRDVRDGFGSLSRRSFEVRLPSQYRAKSHGLVVQLHDEPPIIQTSRWASLPPELLRDVVKRLEASESTWPARKNVVACAGVCRSWRDMCKEIVKGPELSGKITFPVSLKQPGPRDGMVQCFIKRNKSNLTYHLFLSLSPALLVENGKFLLSAKRTRRTTSTEYVISLVADDISRSSSGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPPPGRSRRFYSKKVSPKVPAGSYNIAQIAYELNVLGTRGPRRMQCSMYSIPVSALEPGCTVPGQPELHPRLLEDSFRSISFSKSIDHSTEFSSSRFSDVSGMLKEDGEGKDRPLILQNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATTPATEPPAPSQPTQPVQPAHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1539533 1543171 + evm.model.ptg000021l.234 HCH13g0234 556739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0234 430 ProSitePatterns Tub family signature 2. 415 430 IPR018066 -
HCH13g0234 430 SUPERFAMILY F-box domain 43 96 IPR036047 GO:0005515(InterPro)
HCH13g0234 430 PANTHER TUBBY-RELATED 44 429 - -
HCH13g0234 430 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
HCH13g0234 430 PRINTS Tubby superfamily signature 408 430 IPR000007 -
HCH13g0234 430 PRINTS Tubby superfamily signature 169 185 IPR000007 -
HCH13g0234 430 PRINTS Tubby superfamily signature 387 406 IPR000007 -
HCH13g0234 430 PRINTS Tubby superfamily signature 185 209 IPR000007 -
HCH13g0234 430 PRINTS Tubby superfamily signature 234 261 IPR000007 -
HCH13g0234 430 PRINTS Tubby superfamily signature 328 345 IPR000007 -
HCH13g0234 430 PRINTS Tubby superfamily signature 346 362 IPR000007 -
HCH13g0234 430 SUPERFAMILY Tubby C-terminal domain-like 102 430 IPR025659 -
HCH13g0234 430 Gene3D - 48 100 - -
HCH13g0234 430 Gene3D Tubby Protein; Chain A 112 424 IPR025659 -
HCH13g0234 430 CDD F-box_AtTLP-like 53 97 - -
HCH13g0234 430 Pfam Tub family 114 425 IPR000007 -
HCH13g0234 430 FunFam Tubby-like F-box protein 48 101 - -
HCH13g0234 430 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
HCH13g0234 430 FunFam Tubby-like F-box protein 110 430 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0876 HCH-Chr11:39677143 HCH13g0234 HCH-Chr13:1539533 4.00E-190 dispersed
HCH13g0234 HCH-Chr13:1539533 HCH6g1661 HCH-Chr6:49522540 1.30E-119 dispersed
HCH12g0183 HCH-Chr12:996414 HCH13g0234 HCH-Chr13:1539533 5.30E-118 transposed
HCH4g1250 HCH-Chr4:8572864 HCH13g0234 HCH-Chr13:1539533 1.10E-11 transposed
HCH12g1446 HCH-Chr12:39198182 HCH13g0234 HCH-Chr13:1539533 3.60E-199 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32779 PF01167 Tub 1.60E-114 CL0395 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0234 K19600 - csv:101203074 754.207