Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0260 ATGGAGTGGAACTTTGATAGATTTCTAAAACGGTTTGTTTTATATCTCATATCCATGTTCTTAACAACCTCAATCGTTGTCTCACTCTCTCCTGACGGACAAGCTCTTCTCTCTCTCCTCCATGCAGCTGGTCCTTCTGCAAAATCAGCTTCTTCTGTTCTCTCTTCATGGAATCCATCAAACCCTAATCCTTGTTTTTGGGAAGGCATTACTTGTTCTCCTCAAAACAGAGTTATTTCTCTTTCTCTCTCTAAAACTTTCCTAAACCTCTCATTTTTGCCTCCAGAGTTGTCTTCTCTCTCTTCTCTTCAATTTCTTAATCTTTCATCTACTAATGTTTCTGGAACAATCCCTTCTTCTTTTGGCTTACTTTCCCATCTTCACATATTGGATCTTTCCTCTAATGATTTATATGGTCCTATTCCTTCACAGCTTGGTTTACTTTCTTCTCTTCAATTTCTTTACTTGAATTCCAATAGGTTGTCTGGTAATATTCCTCCACATCTTGCTAATCTTACTTCATTGCAAAATTTATGCCTTCAAGACAATCTGTTTAATGGGTCCATACCATCTCAATTTGGTTCTTTGGTTTCACTCCAAGAGTTTCGTATCGGTGGGAATCCGTATTTAGATGGAGAGATTCCGCCACAATTGGGATTACTTACTAATTTGACGACATTCGGGGCTGCGGCTACTGCACTTTGGGGTGCGATACCATCGACATTTGGGAGCTTAATTAGTCTTCAAACTTTGGCACTATATGATACTGAGATATCAGGTTCATTGCCTTCTGAACTTGGATTGTGTTCTGAGCTGAGGAATTTGTATTTGCACATGAACAAGCTCACTGGTGAAATCCCTCCTCAGTTGGGAAAGTTGCAAAAGCTTACTAGTTTGTATCTTTGGGGTAATGCTTTATCAGGGACAATTCCTGCCGAGATTTCGAATTGTTCGGCACTTGTTCTTTTTGATGCTTCGGCGAACGATCTTTCGGGGGAAATCCCAAGTGATTTAGGGAAGTTAGCCGTGCTTGAACAACTTCATCTATCGGACAATTCGATCACGGGAACGATACCGTGGCAGTTGAGCAACTGCACAAGCTTAACTGCTCTTCAGCTTGATAAAAATCAATTGTCAGGTGTTATTCCTCTGCAAATTGGCAATTTGAAATTCTTGCAAAGTTTTTTCTTGTGGGGCAATTCTATATCAGGGACAATACCATCCTCCTTTGGCAACTGCACTGAGTTATTTGCTCTTGATCTTTCAAGAAACAAACTGACTGGGATTATCCCAGAAGAAATTTTCAGCTTGAAGAAATTGAGCAAGCTTTTGCTTCTTGAAAATTCTTTATCTGGAGGTTTGCCACGGAGTGTTGCAAATTGTCAATCATTGGTGAGGTTGAGGCTTGGCGAAAACCAGCTATCGGGCCCGATTCCGAAGGAGGTAGGACAATTGCAGAATCTTGTTTTTCTTGACTTGTATATGAATCATTTCTCTGGTGGCCTTCCTTTTGAGATTTCTAATATCACAGTTCTTGAGTTATTGGATGTTCATAATAATTATATAACTGGGGATATTCCTCCTCAGCTTGGAGAGCTGGTGAATTTAGAACAGCTTGATCTCAGTCAAAACAGCTTCACTGGTGAAATTCCTGAGAGCTTTGGGAACTTCAGTTATTTGAACAAACTCATTCTTAACAACAATCTACTGACGGGATCGATTCCGAAGTCGGTTAGATACTTGGAGAAACTGACTCTACTTGATTTGAGTTACAATAGCATATCTGGTGCAATACCACCAGAAATTGGCTATATGAAGAGCTTGACAATCAGTCTAGACTTGAGCTCAAATGTGTTAACTGGAGAAATTCCTGAGACAATGGCCAGTTTGATACAGTTACAATCACTTGATCTTTCCCATAATATGCTTTATGGAAATATTGAAGTTTTGGGTATCTTGACTAGTCTCACTTCCCTCAATATCTCCTACAACAATTTCTCAGGTCCTATACCAGTGACACCGTTCTTTCGAACCCTGTCGGAAAATGCATACCAACAGAACCCAAATCTTTGCGAATCACTTGATGGATATACTTGTTCCTCAAGTTCAACACGGAGAAATGGCTTGAAATCTGCAAAAAGTGTAGCTATAATATCCATCATTCTTACTTCAGTTATTGTCCTAGTTTTTGCTTCATGGATGCTAGTTGCACGGAATCGTAAGTACATGGCGGATAAATCTTCAGGGGCATTGTCTTCTGCATCAGGGGCAGAGGATTTCTCTTATCCATGGACTTTCATCCCTTTTCAAAAGCTCAATTTTACCATTGATAATATCCTGGAATCCATGAAAGATGAAAATATAATTGGAAAAGGTTGGTCTGGGGTTGTTTATAAAGCAGATATGCCCAATGGGGAGTTGGTTGCTGTGAAAAAACTGTGGAAATCAAAGCAAGATGAAGAAGTAGTTGATTCATGTGCTGCAGAGATTCAAATTCTTGGGCATATTCGACACCGGAACATTGTGAAGCTCATAGGCTACTGTTCGAATAGAAGCGTCAAGCTACTTCTCTACAACTACATTTCTAATGGTAATCTGCAACAACTGCTGCAAGAGAACATAAATTTGGACTGGGAGACTAGGTATAAGATAGCAGTTGGTTCCGCCCAGGGTCTCGCTTATCTTCATCACGATTGCGTGCCTGCGATTCTTCACCGTGATGTCAAGTGCAATAACATACTTCTAGACTCAAAGTTTGAGGCTTACTTAGCAGATTTTGGCCTGGCAAAGTTGATGAACACTCCAAATTACCACCATGCCATTTCAAGAGTAGCTGGTTCTTATGGTTACATTGCCCCAGAATATGGATACACCATGAATATAACCGAGAAGAGCGATGTCTATAGCTACGGGGTTGTGCTACTAGAGATAATAACTGGCCGCAGTGCAATTGAGACACAAGTAGGAGATGGCCTTCACATTGTCGAGTGGGTGAAGAAGAAGATGGCAAGCTTTCAACCCGCCATAACGATACTTGATGCAAAGCTCCAAGGGTTACCGGATCAGATGGTGCAAGAAATGCTTCAAACACTTGGAATAGCTATGTTTTGTGTGAATTCATCTCCAGCAGAAAGGCCAACAATGAAGGAAGTGGTAGCATTACTGATGGAGGTAAAGAGCCCTCCAGAAGAATGGGGCAAGACTTCTCAACCTCTAATAAAGCAGTCCTCAAATTTAAGTTGA 3243 40.64 MEWNFDRFLKRFVLYLISMFLTTSIVVSLSPDGQALLSLLHAAGPSAKSASSVLSSWNPSNPNPCFWEGITCSPQNRVISLSLSKTFLNLSFLPPELSSLSSLQFLNLSSTNVSGTIPSSFGLLSHLHILDLSSNDLYGPIPSQLGLLSSLQFLYLNSNRLSGNIPPHLANLTSLQNLCLQDNLFNGSIPSQFGSLVSLQEFRIGGNPYLDGEIPPQLGLLTNLTTFGAAATALWGAIPSTFGSLISLQTLALYDTEISGSLPSELGLCSELRNLYLHMNKLTGEIPPQLGKLQKLTSLYLWGNALSGTIPAEISNCSALVLFDASANDLSGEIPSDLGKLAVLEQLHLSDNSITGTIPWQLSNCTSLTALQLDKNQLSGVIPLQIGNLKFLQSFFLWGNSISGTIPSSFGNCTELFALDLSRNKLTGIIPEEIFSLKKLSKLLLLENSLSGGLPRSVANCQSLVRLRLGENQLSGPIPKEVGQLQNLVFLDLYMNHFSGGLPFEISNITVLELLDVHNNYITGDIPPQLGELVNLEQLDLSQNSFTGEIPESFGNFSYLNKLILNNNLLTGSIPKSVRYLEKLTLLDLSYNSISGAIPPEIGYMKSLTISLDLSSNVLTGEIPETMASLIQLQSLDLSHNMLYGNIEVLGILTSLTSLNISYNNFSGPIPVTPFFRTLSENAYQQNPNLCESLDGYTCSSSSTRRNGLKSAKSVAIISIILTSVIVLVFASWMLVARNRKYMADKSSGALSSASGAEDFSYPWTFIPFQKLNFTIDNILESMKDENIIGKGWSGVVYKADMPNGELVAVKKLWKSKQDEEVVDSCAAEIQILGHIRHRNIVKLIGYCSNRSVKLLLYNYISNGNLQQLLQENINLDWETRYKIAVGSAQGLAYLHHDCVPAILHRDVKCNNILLDSKFEAYLADFGLAKLMNTPNYHHAISRVAGSYGYIAPEYGYTMNITEKSDVYSYGVVLLEIITGRSAIETQVGDGLHIVEWVKKKMASFQPAITILDAKLQGLPDQMVQEMLQTLGIAMFCVNSSPAERPTMKEVVALLMEVKSPPEEWGKTSQPLIKQSSNLS 1080
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1746607 1750001 + evm.model.ptg000021l.260 HCH13g0260 556765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0260 1080 SMART LRR_typ_2 413 437 IPR003591 -
HCH13g0260 1080 SMART LRR_typ_2 533 556 IPR003591 -
HCH13g0260 1080 SMART LRR_typ_2 148 171 IPR003591 -
HCH13g0260 1080 SMART LRR_typ_2 293 317 IPR003591 -
HCH13g0260 1080 SMART LRR_typ_2 581 605 IPR003591 -
HCH13g0260 1080 SMART LRR_typ_2 653 686 IPR003591 -
HCH13g0260 1080 SMART LRR_typ_2 172 196 IPR003591 -
HCH13g0260 1080 SMART LRR_typ_2 245 269 IPR003591 -
HCH13g0260 1080 SMART LRR_typ_2 341 365 IPR003591 -
HCH13g0260 1080 Gene3D Phosphorylase Kinase; domain 1 758 860 - -
HCH13g0260 1080 Gene3D Ribonuclease Inhibitor 574 700 IPR032675 -
HCH13g0260 1080 Gene3D Ribonuclease Inhibitor 382 476 IPR032675 -
HCH13g0260 1080 SMART serkin_6 783 1059 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0260 1080 SUPERFAMILY L domain-like 52 403 - -
HCH13g0260 1080 Pfam Leucine rich repeat N-terminal domain 30 73 IPR013210 -
HCH13g0260 1080 ProSiteProfiles Protein kinase domain profile. 783 1073 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0260 1080 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 208 431 - -
HCH13g0260 1080 ProSitePatterns Protein kinases ATP-binding region signature. 789 812 IPR017441 GO:0005524(InterPro)
HCH13g0260 1080 Gene3D Ribonuclease Inhibitor 477 573 IPR032675 -
HCH13g0260 1080 Gene3D Ribonuclease Inhibitor 286 381 IPR032675 -
HCH13g0260 1080 Gene3D Ribonuclease Inhibitor 32 189 IPR032675 -
HCH13g0260 1080 Pfam Leucine rich repeat 392 450 IPR001611 GO:0005515(InterPro)
HCH13g0260 1080 ProSitePatterns Serine/Threonine protein kinases active-site signature. 903 915 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0260 1080 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 601 1058 IPR050647 -
HCH13g0260 1080 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 439 510 - -
HCH13g0260 1080 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 512 703 - -
HCH13g0260 1080 PRINTS Leucine-rich repeat signature 416 429 - -
HCH13g0260 1080 PRINTS Leucine-rich repeat signature 630 643 - -
HCH13g0260 1080 Gene3D Transferase(Phosphotransferase) domain 1 861 1070 - -
HCH13g0260 1080 Gene3D Ribonuclease Inhibitor 190 285 IPR032675 -
HCH13g0260 1080 FunFam Putative LRR receptor-like serine/threonine-protein kinase 768 860 - -
HCH13g0260 1080 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 29 192 - -
HCH13g0260 1080 SUPERFAMILY Protein kinase-like (PK-like) 768 1056 IPR011009 -
HCH13g0260 1080 SUPERFAMILY L domain-like 282 679 - -
HCH13g0260 1080 Pfam Protein kinase domain 785 1052 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0260 1080 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 861 1073 - -
HCH13g0260 1080 ProSiteProfiles Leucine-rich repeat profile. 632 654 IPR001611 GO:0005515(InterPro)
HCH13g0260 1080 Pfam Leucine Rich Repeat 126 146 IPR001611 GO:0005515(InterPro)
HCH13g0260 1080 Pfam Leucine Rich Repeat 272 293 IPR001611 GO:0005515(InterPro)
HCH13g0260 1080 Pfam Leucine Rich Repeat 344 365 IPR001611 GO:0005515(InterPro)
HCH13g0260 1080 Pfam Leucine Rich Repeat 535 557 IPR001611 GO:0005515(InterPro)
HCH13g0260 1080 Pfam Leucine Rich Repeat 655 672 IPR001611 GO:0005515(InterPro)
HCH13g0260 1080 Pfam Leucine Rich Repeat 102 123 IPR001611 GO:0005515(InterPro)
HCH13g0260 1080 Pfam Leucine Rich Repeat 512 533 IPR001611 GO:0005515(InterPro)
HCH13g0260 1080 Pfam Leucine Rich Repeat 150 172 IPR001611 GO:0005515(InterPro)
HCH13g0260 1080 Pfam Leucine Rich Repeat 295 317 IPR001611 GO:0005515(InterPro)
HCH13g0260 1080 Pfam Leucine Rich Repeat 583 604 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0260 HCH-Chr13:1746607 HCH6g1438 HCH-Chr6:48138116 5.50E-103 dispersed
HCH10g0353 HCH-Chr10:2856358 HCH13g0260 HCH-Chr13:1746607 5.20E-33 transposed
HCH12g1430 HCH-Chr12:38116866 HCH13g0260 HCH-Chr13:1746607 8.60E-96 transposed
HCH12g1464 HCH-Chr12:39998509 HCH13g0260 HCH-Chr13:1746607 3.30E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81160 PF00069 Pkinase 4.10E-46 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0260 - - - 0.0