Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH13g0266 | ATGGCGGCTACTGTTCAAACACCTGTAACGGCGGCGGTGTTGACGACTCAAGTTCCGACGGCGGCGATTCCTGTAGCCGGCGGCGTTCCGGTTGCTGGTGGATTTTCGTCTTCGTCATTGTACGTAGGGGATCTGGAGTTGAATGTGAACGAGGGACAGCTTTTGGAACTGTTTAGCCAAATGGGTCAGGTTGTCTCTATTAGGGTTTGTAGAGATCAGGCACGTCGGCAATCTCTTGGTTATGGTTATGTTAATTTCGGAAATCCTCAGGATGCTGCCAATGCCTTGGATGTTTTGAATTTCACTCCTCTTAATGGGAAGCCGATCAGGATTATGGTTTCTAATAGAGATCCCAGTAATCGAAAAAGTGGACATGCAAATGTTTTTATTAAAAATCTGGACACATCAATTGATAACAAGGCATTGCATGATACATTTGCTTCCTTTGGTAGTGTTCTTTCTTGTAAGGTTGCTGTTGATGGAAATGGTCAGTCAAAAGGTTATGGATTCGTTCAGTTTGAAAGCGATGAATCTGCACAAAATGCTATTGATAGGTTGAATGGCATGCTGATCAACGATAAGCAAGTTTATGTTGGACATTTTATTCGCCACCAGGAAAGAAGTGGAGCAAATGGATCGCCTAAGTTTACTAATGTTTATGTGAAGAATTTACCGGAAACAACTACCTCTGATGAGCTCAAAGATCTGTTTGCCTCACACGGTGTTATTACTAGTTCAGTTGTCATGACTGATTCAAATGGGAATTCCAAATGTTTTGGTTTTGTGAACTTTCAGAGCTCAGATTCTGCCGCCGCCGCCGTTGAAGTTTTGAATGGGTCCACCCTCGGTGATGACAAGGTTCTGTATGTAGGTAGGGCTCAAAGGAAGTCAGAAAGGGAGGCTGAGTTGAAAACTAAATTTGAACAGGAAAGATTGAGTAGATATGAAAAATTACAAGGTGCTAATTTATATGTAAAAAATCTGGAAGACAATATGAATGATGAGAAGCTTAAAGAGTTATTCTCTGAGTTTGGAACAATCACATCATGCAAGGTAATGCTTGATCAACATGGATTGAGCAAGGGGTCCGGTTTCGTAGCCTTTTCTTTACCAGAAGAAGCAACAAAAGCTTTAAATGAGATGAATGGAAAGATGATTGGAAGGAAACCTCTGTATGTAGCTGTTGCGCAGCGCAAAGAAGATAGGAAGGTGCGGTTGCAGGCACAATTTTCTCAAATCCGACCAGCAGGTGGAATGGCATCTTTGCCTTCAGGACTTCCAGGATTTCATCCAGGGGCACCAAGACTTGCACCTCAGCAGTTGTTTTATGGCCAGGGAGCTCCAGGTCTGATGCCCCCACAGCCTGCTGGGTATGGATTCCAGCAGCAACTCATGCCTGGGATGCGACCTGGTATTGCCCCCAACTTCATCATGCCTTACCAGTATCAAAGGCAAGGACAACCTGGGCCACGGACCGGGATGAGGCGAGGTGGAAACTCTCAACCGGTTCAGCAGCAGATGCTGCTCCGTAACTCTGCTCAAGGTTTTAGATATATGAATAATGCACGAAATGGATTGGAACCACCTGTCGTGCCACAAGGTCTTGTTGGTCCAATGATGCCTTTGGCTTTTGATAATGCTGGAGTGACAAGCTCTTCTAATGACATCCAGCGAACAAGACCAGTGCCTAGTTCAACACTTGCTTCTGCTTTAGCTTCTGCTACGCCAGAGAATCAGCGCTTGATGCTTGGTGAGCAGTTGTATCCACTTGTGGACCGTCTTGAGGCCGGTCATGCAGCAAAGGTAACTGGAATGTTGCTGGAGATGGACCAAACAGAGGTCCTTCATCTCATAGAGTCTCCGGATGACTTGAAAAATAAGGTGGGTGAGGCAATGGAAGTCCTCCGCAAAGCGTCATCAGAGACCGAGCTTTCTGATCAGCTAGGTTCGGTGGCACTGAGCAAATGA | 1968 | 45.38 | MAATVQTPVTAAVLTTQVPTAAIPVAGGVPVAGGFSSSSLYVGDLELNVNEGQLLELFSQMGQVVSIRVCRDQARRQSLGYGYVNFGNPQDAANALDVLNFTPLNGKPIRIMVSNRDPSNRKSGHANVFIKNLDTSIDNKALHDTFASFGSVLSCKVAVDGNGQSKGYGFVQFESDESAQNAIDRLNGMLINDKQVYVGHFIRHQERSGANGSPKFTNVYVKNLPETTTSDELKDLFASHGVITSSVVMTDSNGNSKCFGFVNFQSSDSAAAAVEVLNGSTLGDDKVLYVGRAQRKSEREAELKTKFEQERLSRYEKLQGANLYVKNLEDNMNDEKLKELFSEFGTITSCKVMLDQHGLSKGSGFVAFSLPEEATKALNEMNGKMIGRKPLYVAVAQRKEDRKVRLQAQFSQIRPAGGMASLPSGLPGFHPGAPRLAPQQLFYGQGAPGLMPPQPAGYGFQQQLMPGMRPGIAPNFIMPYQYQRQGQPGPRTGMRRGGNSQPVQQQMLLRNSAQGFRYMNNARNGLEPPVVPQGLVGPMMPLAFDNAGVTSSSNDIQRTRPVPSSTLASALASATPENQRLMLGEQLYPLVDRLEAGHAAKVTGMLLEMDQTEVLHLIESPDDLKNKVGEAMEVLRKASSETELSDQLGSVALSK | 655 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 1762899 | 1766678 | - | evm.model.ptg000021l.266 | HCH13g0266 | 556771 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH13g0266 | 655 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 126 | 198 | IPR000504 | GO:0003723(InterPro) | |
HCH13g0266 | 655 | SMART | poly_2 | 575 | 638 | IPR002004 | GO:0003723(InterPro) | |
HCH13g0266 | 655 | SUPERFAMILY | PABC (PABP) domain | 477 | 642 | IPR036053 | GO:0003723(InterPro) | |
HCH13g0266 | 655 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 38 | 636 | IPR006515 | GO:0003723(InterPro) | |
HCH13g0266 | 655 | SUPERFAMILY | RNA-binding domain, RBD | 317 | 418 | IPR035979 | GO:0003676(InterPro) | |
HCH13g0266 | 655 | FunFam | Polyadenylate-binding protein | 17 | 121 | - | - | |
HCH13g0266 | 655 | CDD | RRM4_I_PABPs | 320 | 398 | - | - | |
HCH13g0266 | 655 | SUPERFAMILY | RNA-binding domain, RBD | 213 | 302 | IPR035979 | GO:0003676(InterPro) | |
HCH13g0266 | 655 | Gene3D | - | 34 | 126 | IPR012677 | - | |
HCH13g0266 | 655 | SMART | rrm1_1 | 39 | 112 | IPR000504 | GO:0003723(InterPro) | |
HCH13g0266 | 655 | SMART | rrm1_1 | 218 | 291 | IPR000504 | GO:0003723(InterPro) | |
HCH13g0266 | 655 | SMART | rrm1_1 | 322 | 394 | IPR000504 | GO:0003723(InterPro) | |
HCH13g0266 | 655 | SMART | rrm1_1 | 127 | 199 | IPR000504 | GO:0003723(InterPro) | |
HCH13g0266 | 655 | FunFam | Polyadenylate-binding protein | 559 | 641 | - | - | |
HCH13g0266 | 655 | Gene3D | - | 559 | 641 | - | - | |
HCH13g0266 | 655 | Gene3D | - | 127 | 200 | IPR012677 | - | |
HCH13g0266 | 655 | SUPERFAMILY | RNA-binding domain, RBD | 37 | 205 | IPR035979 | GO:0003676(InterPro) | |
HCH13g0266 | 655 | Pfam | RNA recognition motif | 219 | 286 | IPR000504 | GO:0003723(InterPro) | |
HCH13g0266 | 655 | Pfam | RNA recognition motif | 40 | 110 | IPR000504 | GO:0003723(InterPro) | |
HCH13g0266 | 655 | Pfam | RNA recognition motif | 323 | 391 | IPR000504 | GO:0003723(InterPro) | |
HCH13g0266 | 655 | Pfam | RNA recognition motif | 128 | 196 | IPR000504 | GO:0003723(InterPro) | |
HCH13g0266 | 655 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 321 | 398 | IPR000504 | GO:0003723(InterPro) | |
HCH13g0266 | 655 | FunFam | Polyadenylate-binding protein | 304 | 409 | - | - | |
HCH13g0266 | 655 | FunFam | Polyadenylate-binding protein | 127 | 200 | - | - | |
HCH13g0266 | 655 | Gene3D | - | 202 | 302 | IPR012677 | - | |
HCH13g0266 | 655 | Gene3D | - | 303 | 406 | IPR012677 | - | |
HCH13g0266 | 655 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 38 | 116 | IPR000504 | GO:0003723(InterPro) | |
HCH13g0266 | 655 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 217 | 295 | IPR000504 | GO:0003723(InterPro) | |
HCH13g0266 | 655 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 563 | 640 | IPR002004 | GO:0003723(InterPro) | |
HCH13g0266 | 655 | CDD | RRM3_I_PABPs | 216 | 296 | - | - | |
HCH13g0266 | 655 | CDD | RRM2_I_PABPs | 124 | 200 | IPR045305 | - | |
HCH13g0266 | 655 | Pfam | Poly-adenylate binding protein, unique domain | 570 | 635 | IPR002004 | GO:0003723(InterPro) | |
HCH13g0266 | 655 | SMART | rrm2_1 | 322 | 394 | IPR003954 | GO:0003676(InterPro) | |
HCH13g0266 | 655 | SMART | rrm2_1 | 218 | 290 | IPR003954 | GO:0003676(InterPro) | |
HCH13g0266 | 655 | SMART | rrm2_1 | 127 | 199 | IPR003954 | GO:0003676(InterPro) | |
HCH13g0266 | 655 | SMART | rrm2_1 | 39 | 112 | IPR003954 | GO:0003676(InterPro) | |
HCH13g0266 | 655 | PANTHER | RNA BINDING PROTEIN | 34 | 220 | - | GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g1381 | HCH-Chr12:35467586 | HCH13g0266 | HCH-Chr13:1762899 | 4.00E-29 | dispersed | |
HCH13g0266 | HCH-Chr13:1762899 | HCH7g0657 | HCH-Chr7:6785847 | 1.90E-191 | dispersed | |
HCH13g0266 | HCH-Chr13:1762899 | HCH11g0348 | HCH-Chr11:3298268 | 2.00E-124 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH13g0266 | K13126 | - | csv:101219081 | 983.015 |