Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0266 ATGGCGGCTACTGTTCAAACACCTGTAACGGCGGCGGTGTTGACGACTCAAGTTCCGACGGCGGCGATTCCTGTAGCCGGCGGCGTTCCGGTTGCTGGTGGATTTTCGTCTTCGTCATTGTACGTAGGGGATCTGGAGTTGAATGTGAACGAGGGACAGCTTTTGGAACTGTTTAGCCAAATGGGTCAGGTTGTCTCTATTAGGGTTTGTAGAGATCAGGCACGTCGGCAATCTCTTGGTTATGGTTATGTTAATTTCGGAAATCCTCAGGATGCTGCCAATGCCTTGGATGTTTTGAATTTCACTCCTCTTAATGGGAAGCCGATCAGGATTATGGTTTCTAATAGAGATCCCAGTAATCGAAAAAGTGGACATGCAAATGTTTTTATTAAAAATCTGGACACATCAATTGATAACAAGGCATTGCATGATACATTTGCTTCCTTTGGTAGTGTTCTTTCTTGTAAGGTTGCTGTTGATGGAAATGGTCAGTCAAAAGGTTATGGATTCGTTCAGTTTGAAAGCGATGAATCTGCACAAAATGCTATTGATAGGTTGAATGGCATGCTGATCAACGATAAGCAAGTTTATGTTGGACATTTTATTCGCCACCAGGAAAGAAGTGGAGCAAATGGATCGCCTAAGTTTACTAATGTTTATGTGAAGAATTTACCGGAAACAACTACCTCTGATGAGCTCAAAGATCTGTTTGCCTCACACGGTGTTATTACTAGTTCAGTTGTCATGACTGATTCAAATGGGAATTCCAAATGTTTTGGTTTTGTGAACTTTCAGAGCTCAGATTCTGCCGCCGCCGCCGTTGAAGTTTTGAATGGGTCCACCCTCGGTGATGACAAGGTTCTGTATGTAGGTAGGGCTCAAAGGAAGTCAGAAAGGGAGGCTGAGTTGAAAACTAAATTTGAACAGGAAAGATTGAGTAGATATGAAAAATTACAAGGTGCTAATTTATATGTAAAAAATCTGGAAGACAATATGAATGATGAGAAGCTTAAAGAGTTATTCTCTGAGTTTGGAACAATCACATCATGCAAGGTAATGCTTGATCAACATGGATTGAGCAAGGGGTCCGGTTTCGTAGCCTTTTCTTTACCAGAAGAAGCAACAAAAGCTTTAAATGAGATGAATGGAAAGATGATTGGAAGGAAACCTCTGTATGTAGCTGTTGCGCAGCGCAAAGAAGATAGGAAGGTGCGGTTGCAGGCACAATTTTCTCAAATCCGACCAGCAGGTGGAATGGCATCTTTGCCTTCAGGACTTCCAGGATTTCATCCAGGGGCACCAAGACTTGCACCTCAGCAGTTGTTTTATGGCCAGGGAGCTCCAGGTCTGATGCCCCCACAGCCTGCTGGGTATGGATTCCAGCAGCAACTCATGCCTGGGATGCGACCTGGTATTGCCCCCAACTTCATCATGCCTTACCAGTATCAAAGGCAAGGACAACCTGGGCCACGGACCGGGATGAGGCGAGGTGGAAACTCTCAACCGGTTCAGCAGCAGATGCTGCTCCGTAACTCTGCTCAAGGTTTTAGATATATGAATAATGCACGAAATGGATTGGAACCACCTGTCGTGCCACAAGGTCTTGTTGGTCCAATGATGCCTTTGGCTTTTGATAATGCTGGAGTGACAAGCTCTTCTAATGACATCCAGCGAACAAGACCAGTGCCTAGTTCAACACTTGCTTCTGCTTTAGCTTCTGCTACGCCAGAGAATCAGCGCTTGATGCTTGGTGAGCAGTTGTATCCACTTGTGGACCGTCTTGAGGCCGGTCATGCAGCAAAGGTAACTGGAATGTTGCTGGAGATGGACCAAACAGAGGTCCTTCATCTCATAGAGTCTCCGGATGACTTGAAAAATAAGGTGGGTGAGGCAATGGAAGTCCTCCGCAAAGCGTCATCAGAGACCGAGCTTTCTGATCAGCTAGGTTCGGTGGCACTGAGCAAATGA 1968 45.38 MAATVQTPVTAAVLTTQVPTAAIPVAGGVPVAGGFSSSSLYVGDLELNVNEGQLLELFSQMGQVVSIRVCRDQARRQSLGYGYVNFGNPQDAANALDVLNFTPLNGKPIRIMVSNRDPSNRKSGHANVFIKNLDTSIDNKALHDTFASFGSVLSCKVAVDGNGQSKGYGFVQFESDESAQNAIDRLNGMLINDKQVYVGHFIRHQERSGANGSPKFTNVYVKNLPETTTSDELKDLFASHGVITSSVVMTDSNGNSKCFGFVNFQSSDSAAAAVEVLNGSTLGDDKVLYVGRAQRKSEREAELKTKFEQERLSRYEKLQGANLYVKNLEDNMNDEKLKELFSEFGTITSCKVMLDQHGLSKGSGFVAFSLPEEATKALNEMNGKMIGRKPLYVAVAQRKEDRKVRLQAQFSQIRPAGGMASLPSGLPGFHPGAPRLAPQQLFYGQGAPGLMPPQPAGYGFQQQLMPGMRPGIAPNFIMPYQYQRQGQPGPRTGMRRGGNSQPVQQQMLLRNSAQGFRYMNNARNGLEPPVVPQGLVGPMMPLAFDNAGVTSSSNDIQRTRPVPSSTLASALASATPENQRLMLGEQLYPLVDRLEAGHAAKVTGMLLEMDQTEVLHLIESPDDLKNKVGEAMEVLRKASSETELSDQLGSVALSK 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1762899 1766678 - evm.model.ptg000021l.266 HCH13g0266 556771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0266 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 198 IPR000504 GO:0003723(InterPro)
HCH13g0266 655 SMART poly_2 575 638 IPR002004 GO:0003723(InterPro)
HCH13g0266 655 SUPERFAMILY PABC (PABP) domain 477 642 IPR036053 GO:0003723(InterPro)
HCH13g0266 655 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 38 636 IPR006515 GO:0003723(InterPro)
HCH13g0266 655 SUPERFAMILY RNA-binding domain, RBD 317 418 IPR035979 GO:0003676(InterPro)
HCH13g0266 655 FunFam Polyadenylate-binding protein 17 121 - -
HCH13g0266 655 CDD RRM4_I_PABPs 320 398 - -
HCH13g0266 655 SUPERFAMILY RNA-binding domain, RBD 213 302 IPR035979 GO:0003676(InterPro)
HCH13g0266 655 Gene3D - 34 126 IPR012677 -
HCH13g0266 655 SMART rrm1_1 39 112 IPR000504 GO:0003723(InterPro)
HCH13g0266 655 SMART rrm1_1 218 291 IPR000504 GO:0003723(InterPro)
HCH13g0266 655 SMART rrm1_1 322 394 IPR000504 GO:0003723(InterPro)
HCH13g0266 655 SMART rrm1_1 127 199 IPR000504 GO:0003723(InterPro)
HCH13g0266 655 FunFam Polyadenylate-binding protein 559 641 - -
HCH13g0266 655 Gene3D - 559 641 - -
HCH13g0266 655 Gene3D - 127 200 IPR012677 -
HCH13g0266 655 SUPERFAMILY RNA-binding domain, RBD 37 205 IPR035979 GO:0003676(InterPro)
HCH13g0266 655 Pfam RNA recognition motif 219 286 IPR000504 GO:0003723(InterPro)
HCH13g0266 655 Pfam RNA recognition motif 40 110 IPR000504 GO:0003723(InterPro)
HCH13g0266 655 Pfam RNA recognition motif 323 391 IPR000504 GO:0003723(InterPro)
HCH13g0266 655 Pfam RNA recognition motif 128 196 IPR000504 GO:0003723(InterPro)
HCH13g0266 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 321 398 IPR000504 GO:0003723(InterPro)
HCH13g0266 655 FunFam Polyadenylate-binding protein 304 409 - -
HCH13g0266 655 FunFam Polyadenylate-binding protein 127 200 - -
HCH13g0266 655 Gene3D - 202 302 IPR012677 -
HCH13g0266 655 Gene3D - 303 406 IPR012677 -
HCH13g0266 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723(InterPro)
HCH13g0266 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 295 IPR000504 GO:0003723(InterPro)
HCH13g0266 655 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 563 640 IPR002004 GO:0003723(InterPro)
HCH13g0266 655 CDD RRM3_I_PABPs 216 296 - -
HCH13g0266 655 CDD RRM2_I_PABPs 124 200 IPR045305 -
HCH13g0266 655 Pfam Poly-adenylate binding protein, unique domain 570 635 IPR002004 GO:0003723(InterPro)
HCH13g0266 655 SMART rrm2_1 322 394 IPR003954 GO:0003676(InterPro)
HCH13g0266 655 SMART rrm2_1 218 290 IPR003954 GO:0003676(InterPro)
HCH13g0266 655 SMART rrm2_1 127 199 IPR003954 GO:0003676(InterPro)
HCH13g0266 655 SMART rrm2_1 39 112 IPR003954 GO:0003676(InterPro)
HCH13g0266 655 PANTHER RNA BINDING PROTEIN 34 220 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1381 HCH-Chr12:35467586 HCH13g0266 HCH-Chr13:1762899 4.00E-29 dispersed
HCH13g0266 HCH-Chr13:1762899 HCH7g0657 HCH-Chr7:6785847 1.90E-191 dispersed
HCH13g0266 HCH-Chr13:1762899 HCH11g0348 HCH-Chr11:3298268 2.00E-124 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0266 K13126 - csv:101219081 983.015