Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0283 ATGGAGAAGTTTTGCTTTGTTTTTTCTCTCCATTCCTTTTTCTTCTTGTTCTTCATTCTTCTTAGTCTATTTGTTCCAAGTCTGCCTCATCCAACTGAGACTCAAGCACTGGTTCATTTCAAGAAAAGTCTCAAAGACCCTTTGGGTTCTCTTCATTCCTGGATTGATTCTGAATCCCCTTGTGAGTTCTCGGGGATTGTTTGCGATTCGGTTTCCGGGAAAGTTGTAGAAATTTATCTAGAAAACAAGTCTCTTTCTGGTGAGATTTCTCCCTCAATTTCTGTTCTGCAAAGTCTCACAGTCTTTTCATTGCCCTCGAATGACATTTCCGGGGAGCTTCCTACCGAACTGATCAATTGTACCAACCTTAGAGTATTGAACCTTACTCAAAATGAAATGGTAGGGAGAATTCCTGATCTTTCCCAGTTGAGAAAATTGGAGATTCTAGATCTATCAATAAACTACTTCTCTGGCCAGTTCCCAACTTGGATTGGAACTTTAACTGGACTGACTTCTCTGGGTCTTGGTGAAAATGAATTCGAGGACAGTGATATACCGGGATCTATTGGAAACTTGAAGAACTTAACTTGGCTATATTTGGCAAATGCACATTTGAGAGGGGGAATACCAGAATCTCTTTTTGAATTGAAGGCATTAGAGACACTGGATCTTTCAAGGAACAAGATTTCTGGGCAACTGTCCAAGTCAATATCCAAGTTACAGAATCTCAATAAGCTCGAACTTTTTATCAACAATTTGACAGGAGAAATCCCACCAGAGATTGCAAACCTTACCCTTCTGCAAGAAATTGATATATCTGCAAATAATTTGCACGGTCAGTTGCCGGAAGGGCTTGGGAACCTAGGAAATTTGGTGGTTTTTCAGTTGTATGAAAACAACTTATCTGGAAAGTTCCCAGAAGGGTTTGGAAATATGCAAAATCTTATTGCATTTTCAATCTACAGAAACAAATTTTCTGGAGAATTTCCAATGAATTTCGGGAGATTTGCACCGTTGAACAGCATCGATGTGTCAGAGAATCAATTCTCAGGAAGTTTCCCCAAGTTCTTGTGTGAAAACCTGAAGTTACAGTTCTTACTTGCTTTGGAAAATAATTTTTCAGGGGAGTTTCCACATTCTTTTGCCGAGTGCAAATCGCTGCTGAGGTTCAGAATCAATAGTAATCAACTGTCAGGCAAGATTCCAGATGGGGTTTGGGCTCTTCCTTATGTAAAAATGTTTGATCTTAGTGACAATGAATTCACAGGAGCCATATCCCCAAACATAGGGCTTTCTACCAGCTTGAACCAATTGGTTTTGAGAAATAACAAGTTTACTGGTAAGCTTCCATCAGAACTTGGCAAGTTAACAAACTTAGAGAGGCTTCATTTGAGTAATAATGACTTCAATGGAGAAATACCTTCTGAAATAGGCTTTCTAAGGCAACTTTCATCATTACATCTGGAAGAAAACTCATTGAATGGATCAATTCCATCAGAGATTGGTAATTGTGAAAGATTGGTGGACATAAATTTTGCTCATAACTCTCTGAGTGGAAGCATTCCAACTGCATTTTCACTCATCAGCTCTTTAAACTCACTCAACCTCTCAAAGAATATATTTACAGGTTTAATCCCTGAATATTTAGAGAAAATGAAGTTAAGCTCCATTGATTTGTCAGGAAACCAGCTATCAGGAAGAGTTCCTTCCAATCTTCTGGCCATGAGTGGGGACAAAGCATTTTCCAGCAACAAGGAACTCTGTATCGACGAAAACTACAGAGAACGGTTAAATACCAGCCTGAATGCTTGTTCTGGAAAACCTAGTAAAAAAGGCGTATTCGAGGATAAACTTGTATATTTCAGTATCATAGTATCAATCTTGGTTTGTGTCTTAGCTGGGTTAGTGTTTGTAAGCTGTTATTATTTGAAGCTCAATGAGATTGGCCAGGAAACCAGTATGGAGAGGGACCAAAAAGGAAATCCAAAATGGAAAATTGCATCATTCCATCAAGTGGAAATTGATGCAGATGAAATATGCAGCTTTGAAGAAGACAATTTGATAGGGAGTGGGGGCACGGGGAAGGTTTATCGATTGGATTTGAAGAAAAATGGAGGACCAGTGGCTGTTAAGCAACTCTGGAAAGGAGATGCAATGAAGGTTCTGGCAGCAGAAATGGATATTTTGGGAAAGATAAGGCATAGAAACATATTGAAACTCTATGCCTGTTTAACGAAGGAAGGGTCTAGTTATTTAGTTTTTGAATATATGGCTAACGGTAACCTGTGTGAAGCACTTCAAAGACAGGTAAAAGGTGGGCAGCCTGAATTGGATTGGTATCAGAGGTATAAGATTGCTTTGGGATCAGCAAGGGGGATTGCTTACTTGCACCATGATTGTTCACCACCCATAATTCATAGAGATATAAAATCAATGAACATACTTCTCGACGAAGATTACGAACCAAAAATTGCCGACTTCGGTGTCGCAAAGATTGCAGACAACCTTCAAAGTGTTTCGGAGCACAGCTCTTTTGCTGGCACTCATGGTTATATTGCTCCTGAACTAGCATATACCCTGAAAGTAACTGAAAAGAGTGATGTGTACAGTTATGGGGTGGTGCTGTTAGAATTAGTTACCGGTAGGAGACCGATCGAAGATGAATATGGAGAAGGAAAAGATATTGTCTATTGGGTCTCGACGCATCTCAACGACCGTAAAAGCGTCCTCAAGCTTCTAGACATCAAAGTCACATCAGAAACTCTCCAAAATGACATGATTAAGGTCTTGAAGATTGCTGTACTTTGCACAACAAAACTTCCATCACTTCGCCCTTCAATGAGAGAAGTAGTGAAGATGCTTTTGGATGCTGATCCTTACTCTTCTTCAATGTCCCTGAACAACAGTTTAAACAAAAACATCAAGGATTTTGTTTTAGATCATAAATGA 2949 39.34 MEKFCFVFSLHSFFFLFFILLSLFVPSLPHPTETQALVHFKKSLKDPLGSLHSWIDSESPCEFSGIVCDSVSGKVVEIYLENKSLSGEISPSISVLQSLTVFSLPSNDISGELPTELINCTNLRVLNLTQNEMVGRIPDLSQLRKLEILDLSINYFSGQFPTWIGTLTGLTSLGLGENEFEDSDIPGSIGNLKNLTWLYLANAHLRGGIPESLFELKALETLDLSRNKISGQLSKSISKLQNLNKLELFINNLTGEIPPEIANLTLLQEIDISANNLHGQLPEGLGNLGNLVVFQLYENNLSGKFPEGFGNMQNLIAFSIYRNKFSGEFPMNFGRFAPLNSIDVSENQFSGSFPKFLCENLKLQFLLALENNFSGEFPHSFAECKSLLRFRINSNQLSGKIPDGVWALPYVKMFDLSDNEFTGAISPNIGLSTSLNQLVLRNNKFTGKLPSELGKLTNLERLHLSNNDFNGEIPSEIGFLRQLSSLHLEENSLNGSIPSEIGNCERLVDINFAHNSLSGSIPTAFSLISSLNSLNLSKNIFTGLIPEYLEKMKLSSIDLSGNQLSGRVPSNLLAMSGDKAFSSNKELCIDENYRERLNTSLNACSGKPSKKGVFEDKLVYFSIIVSILVCVLAGLVFVSCYYLKLNEIGQETSMERDQKGNPKWKIASFHQVEIDADEICSFEEDNLIGSGGTGKVYRLDLKKNGGPVAVKQLWKGDAMKVLAAEMDILGKIRHRNILKLYACLTKEGSSYLVFEYMANGNLCEALQRQVKGGQPELDWYQRYKIALGSARGIAYLHHDCSPPIIHRDIKSMNILLDEDYEPKIADFGVAKIADNLQSVSEHSSFAGTHGYIAPELAYTLKVTEKSDVYSYGVVLLELVTGRRPIEDEYGEGKDIVYWVSTHLNDRKSVLKLLDIKVTSETLQNDMIKVLKIAVLCTTKLPSLRPSMREVVKMLLDADPYSSSMSLNNSLNKNIKDFVLDHK 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1887932 1891217 + evm.model.ptg000021l.283 HCH13g0283 556788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0283 982 FunFam leucine-rich repeat receptor-like protein kinase TDR 757 965 - -
HCH13g0283 982 Pfam Protein kinase domain 683 952 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0283 982 FunFam Leucine-rich receptor-like protein kinase family protein 672 756 - -
HCH13g0283 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0283 982 Gene3D Ribonuclease Inhibitor 195 362 IPR032675 -
HCH13g0283 982 Gene3D Transferase(Phosphotransferase) domain 1 761 975 - -
HCH13g0283 982 ProSiteProfiles Leucine-rich repeat profile. 122 144 IPR001611 GO:0005515(InterPro)
HCH13g0283 982 FunFam Probable inactive receptor kinase RLK902 30 187 - -
HCH13g0283 982 SUPERFAMILY L domain-like 57 395 - -
HCH13g0283 982 SUPERFAMILY L domain-like 338 593 - -
HCH13g0283 982 ProSitePatterns Protein kinases ATP-binding region signature. 688 711 IPR017441 GO:0005524(InterPro)
HCH13g0283 982 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
HCH13g0283 982 FunFam Receptor-like protein kinase HSL1 290 596 - -
HCH13g0283 982 Gene3D Ribonuclease Inhibitor 368 474 IPR032675 -
HCH13g0283 982 Gene3D Ribonuclease Inhibitor 475 595 IPR032675 -
HCH13g0283 982 Gene3D Phosphorylase Kinase; domain 1 681 760 - -
HCH13g0283 982 Pfam Leucine Rich Repeat 483 504 IPR001611 GO:0005515(InterPro)
HCH13g0283 982 Pfam Leucine Rich Repeat 553 572 IPR001611 GO:0005515(InterPro)
HCH13g0283 982 Pfam Leucine Rich Repeat 458 480 IPR001611 GO:0005515(InterPro)
HCH13g0283 982 Pfam Leucine Rich Repeat 290 312 IPR001611 GO:0005515(InterPro)
HCH13g0283 982 Pfam Leucine Rich Repeat 434 456 IPR001611 GO:0005515(InterPro)
HCH13g0283 982 Pfam Leucine Rich Repeat 267 288 IPR001611 GO:0005515(InterPro)
HCH13g0283 982 Pfam Leucine Rich Repeat 145 167 IPR001611 GO:0005515(InterPro)
HCH13g0283 982 Pfam Leucine Rich Repeat 219 240 IPR001611 GO:0005515(InterPro)
HCH13g0283 982 Pfam Leucine Rich Repeat 530 552 IPR001611 GO:0005515(InterPro)
HCH13g0283 982 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 15 955 IPR050647 -
HCH13g0283 982 Gene3D Ribonuclease Inhibitor 30 184 IPR032675 -
HCH13g0283 982 SUPERFAMILY Protein kinase-like (PK-like) 679 954 IPR011009 -
HCH13g0283 982 SMART serkin_6 682 961 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0283 982 ProSiteProfiles Protein kinase domain profile. 682 961 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0283 982 SMART LRR_typ_2 216 240 IPR003591 -
HCH13g0283 982 SMART LRR_typ_2 264 288 IPR003591 -
HCH13g0283 982 SMART LRR_typ_2 480 504 IPR003591 -
HCH13g0283 982 SMART LRR_typ_2 167 192 IPR003591 -
HCH13g0283 982 SMART LRR_typ_2 456 478 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0283 HCH-Chr13:1887932 HCH4g0303 HCH-Chr4:1977884 6.80E-84 dispersed
HCH3g0487 HCH-Chr3:3163497 HCH13g0283 HCH-Chr13:1887932 1.00E-08 dispersed
HCH12g1482 HCH-Chr12:40406051 HCH13g0283 HCH-Chr13:1887932 1.00E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81162 PF00069 Pkinase 5.00E-49 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0283 - - - 0.0