Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0289 ATGATGAACTCGATAGGAATCTTTGATGAAATGAGCTTTTGTAGAAACCTTGAATATTTCCCGGCACCTCCTGTGGAACAAGAGACGGCTCAGGAGCATGAACCGGAGGCTACTTTGGAGGAAGATTATAGTGATGAAGAAATGGATGTTGATGAGCTTGAGAGTAGGATGTGGAGAGACCGGATGCTTTTGAGGCGACTTAAAGAACAAACCAAAGGTAAGGAAGGGGTTGATAACACAAAGCAGCGTCAATCCCAGGAGCAGGCACGAAGGAAGAAGATGTCTCGGGCACAAGATGGCATCCTGAAATATATGTTGAAAATGATGGAGGTGTGCAAAGCTCAGGGTTTCGTTTACGGGATCATTCCTGAGAAAGGAAAGCCAGTCAGTGGAGCATCTGACAATCTTCGTGCTTGGTGGAAGGAGAAAGTAAGGTTTGATAGAAATGGCCCGGCTGCAATAGCCAAATATCAGGCTGAACATGCAATTCCTGGGCTGAATGATGACTGCAATGCAGTGACATCCACTCCTCACACTTTACAAGAGCTCCAAGACACAACCCTTGGCTCCCTGTTGTCGGCTCTGATGCAGCATTGTGATCCACCCCAGAGGCGTTTCCCATTAGAGAAGGGAGTTTCCCCACCTTGGTGGCCTACTGGGAACGAGGAATGGTGGCTTGAGTTGGGATTTCCCAAGGAACAGGGGCCTCCCCCTTACAAGAAGCCCCATGATCTGAAGAAGGCTTGGAAAGTCAGCGTGCTCACTGCTGTGATCAAGCACATGTCCCCCGACATCGCCAAGATACGTAAACTTGTTCGTCAGTCTAAATGTTTGCAAGACAAAATGACTGCAAAGGAGAGTGCTACCTGGCTGGCCATCATTAACCAGGAAGAAGCTTTGGCCAGGAAATTGTATCCTGATAGATGTCTTCCTGTGTCAATCTGTGGGACTGGCTCTATTTTAATCAATGACACTAGTGATTATGATGTTGAAGGAGTAGAAGATGATCGAAATGTTGAAGTAGAGCAAAGCAAACCTCACGATCTCAATTTTTTTAACATGGGGGCCGCTGGATCTCGGCAGATGCTTATGATGCCACCAGTGGCACCTCAGATTAAAGAAGAACTCATGGAGAATAACCAAGATTTCATACAAAAGCGGAAGCAGCTAGCTGACGAACCGAATGTAATGAGGGATCGGAAGATATATACTTGCGAGTATTCTCAATGCCCATATAACAATGACCGCCTTGGGTTTCTTGACAGAACTTCAAGAAATAACCACCAGTTGAATTGCCCATTCAGAGGTGATTCTTCCCGTATATTTGGCATCCAGAACTTTCAAATGAACAATGACAAACCACCCCCGATTCCACCGTCCTTTTCATACCCTAAGACGCCTGCTCCACCGGTGAACGAGACTCCACCATTCAGGGTATCAGGACTTGGACTTCCTGAAGATGGGCAGAAAATGATTTCTGAGCTTCTGAGTTTCTATGACACTAATCTTCAACATGACAAAAATTTGAATTCTGGGAGCATCGATGCTAGAGAGGATCACAATCAACAGCCACACAAGTTTCAACTTCAAGTTGATGATAATTTATATAACCAAGGGGCAGTTGTGGGAAGTAGTAGCATGCCAATGCAGCACACGGACTTCTCTTCAACAAAAGTTCAATTCGACGAGTACAAAGCGTTGGATTCTGCATTCGGCATCTATCCCAACGACAATATCTCAGACTTCAGATTTGGTTCTCCATTTAACTTGGCATCAATTGATTATGCAATGGACCCACAATTGCCCAAGCAAGATACACCCTTGTGGTACATGTGA 1836 45.42 MMNSIGIFDEMSFCRNLEYFPAPPVEQETAQEHEPEATLEEDYSDEEMDVDELESRMWRDRMLLRRLKEQTKGKEGVDNTKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQAEHAIPGLNDDCNAVTSTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGNEEWWLELGFPKEQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARKLYPDRCLPVSICGTGSILINDTSDYDVEGVEDDRNVEVEQSKPHDLNFFNMGAAGSRQMLMMPPVAPQIKEELMENNQDFIQKRKQLADEPNVMRDRKIYTCEYSQCPYNNDRLGFLDRTSRNNHQLNCPFRGDSSRIFGIQNFQMNNDKPPPIPPSFSYPKTPAPPVNETPPFRVSGLGLPEDGQKMISELLSFYDTNLQHDKNLNSGSIDAREDHNQQPHKFQLQVDDNLYNQGAVVGSSSMPMQHTDFSSTKVQFDEYKALDSAFGIYPNDNISDFRFGSPFNLASIDYAMDPQLPKQDTPLWYM 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1915070 1916905 - evm.model.ptg000021l.289 HCH13g0289 556794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0289 611 MobiDBLite consensus disorder prediction 25 51 - -
HCH13g0289 611 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 14 605 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
HCH13g0289 611 Gene3D - 175 308 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
HCH13g0289 611 FunFam Ethylene insensitive 3-like 1 83 161 - -
HCH13g0289 611 MobiDBLite consensus disorder prediction 69 95 - -
HCH13g0289 611 Coils Coil 373 393 - -
HCH13g0289 611 Gene3D - 83 163 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
HCH13g0289 611 FunFam Ethylene insensitive 3-like 1 171 308 - -
HCH13g0289 611 Pfam Ethylene insensitive 3, DNA-binding domain 51 298 IPR047091 GO:0003700(InterPro)
HCH13g0289 611 Coils Coil 36 56 - -
HCH13g0289 611 SUPERFAMILY DNA-binding domain of EIN3-like 177 301 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0289 K14514 - - csv:101214396 1038.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0289 HCH-Chr13:1915070 HCH8g0502 HCH-Chr8:41736719 2.10E-208 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g0502 . 1 628 EIL Transcription Factor Family AT2G27050 59.5 2.1e-194 675.6
HCH13g0289 . 1 523 EIL Transcription Factor Family AT2G27050 61.7 2.6e-171 599.0
HCH8g0463 . 46 326 EIL Transcription Factor Family AT2G27050 63.3 1.6e-96 350.5
HCH8g0463 . 46 576 EIL Transcription Factor Family AT1G73730 55.2 6.2e-151 531.2
HCH8g0502 . 33 333 EIL Transcription Factor Family AT1G73730 62.1 5.2e-105 378.6
HCH13g0289 . 40 335 EIL Transcription Factor Family AT1G73730 62.0 1.3e-103 374.0
HCH13g1248 . 23 291 EIL Transcription Factor Family AT1G73730 50.7 2.3e-73 273.5
HCH8g0502 . 2 628 EIL Transcription Factor Family AT3G20770 60.6 1.0e-210 729.9
HCH13g0289 . 7 610 EIL Transcription Factor Family AT3G20770 53.2 1.0e-170 597.0
HCH8g0463 . 46 292 EIL Transcription Factor Family AT3G20770 69.5 6.9e-98 355.1
HCH8g0463 . 83 288 EIL Transcription Factor Family AT5G65100 59.8 7.1e-70 261.9
HCH13g1249 . 1 405 EIL Transcription Factor Family AT5G10120 51.4 2.2e-104 376.3
HCH13g1248 . 22 372 EIL Transcription Factor Family AT5G10120 54.2 4.7e-99 358.6
HCH8g0463 . 46 290 EIL Transcription Factor Family AT5G10120 55.7 1.1e-71 267.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32784 PF04873 EIN3 7.30E-131 No_clan HCH TF