Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0293 ATGGGGATTCAAACTATGGGGACTCAGGCTGGAGGTGATACAAATGGCAAACAATCCCAATTGCAGCCATTGGTTCGTCAAAATTCACTATACAGTCTCACACTGGATGAGGTTCAGAATCAGTTGGGTGATCTGGGAAAGCCGTTAATTAGCATGAACCTTGATGAGCTTCTTAAAAATGTGTGGACTGCCGAGGCCAACCAAACTGTTGGTACAGACAACGAGGATATGGTATTGGCCAATCAAACATCGTTACAACGTCAAGCTAGTCTTTCATTGAATGGTGCTCTGAGTAAAAAGACAGTTGATGAGGTATGGAAAGATATTCAGCAAAGCAAAGACAGTGAGGAGAGGAAGTCTCGAGACCGGCAACCTACTTTGGGAGAGATGACTTTGGAAGATTTTCTGATGAAAGCAGGGGTCGTTACTGATACATCTTTGAATAATAATGGTTCTGGTCCTGTTGTTGAAGTTGATACGAATATGTCACCCCAGTTTTCCCAACAACAAGGTCAGTGGATGCAGTACTCGCAACCTCAATATCAGTCATCACAAGCTACTATGATGGGGGTTTACATGTCGGGCCAGCCTATTCCACAGCCACTGCATGTGGGAGCTAGTGCGGTAATGGATGTTCCATATGTAGACAACCAGTTGTCATTACCACCACCCTTGATGGGAACTTTATCCGATACTCAGACACCTGGAAGGAAAAGGGGAACACCAGATGACATGATCGAGAAAACTGTTGAGCGTAGACAAAAGAGGATGATAAAGAACCGTGAATCTGCTGCTCGTTCAAGAGCAAGGAAGCAGGCTTATACCAATGAACTGGAGAATAAAGTTTCACGTTTGGAAGAGGAAAATGAAAGGCTCAGGAAACGGAAGGAGCTGGAAAAGATACTACCAACGGCACCGTCTCCCGAGCCCAAGTATCAGCTCCGGAGAACATCGTCAGCCCCGTTCTAA 969 45.3 MGIQTMGTQAGGDTNGKQSQLQPLVRQNSLYSLTLDEVQNQLGDLGKPLISMNLDELLKNVWTAEANQTVGTDNEDMVLANQTSLQRQASLSLNGALSKKTVDEVWKDIQQSKDSEERKSRDRQPTLGEMTLEDFLMKAGVVTDTSLNNNGSGPVVEVDTNMSPQFSQQQGQWMQYSQPQYQSSQATMMGVYMSGQPIPQPLHVGASAVMDVPYVDNQLSLPPPLMGTLSDTQTPGRKRGTPDDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKRKELEKILPTAPSPEPKYQLRRTSSAPF 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1940985 1945429 - evm.model.ptg000021l.293 HCH13g0293 556798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0293 322 Pfam bZIP transcription factor 252 296 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g0293 322 MobiDBLite consensus disorder prediction 296 322 - -
HCH13g0293 322 MobiDBLite consensus disorder prediction 1 23 - -
HCH13g0293 322 Gene3D - 250 303 - -
HCH13g0293 322 MobiDBLite consensus disorder prediction 109 128 - -
HCH13g0293 322 Coils Coil 268 302 - -
HCH13g0293 322 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 255 270 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g0293 322 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 250 295 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g0293 322 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 26 320 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
HCH13g0293 322 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 250 302 - -
HCH13g0293 322 SUPERFAMILY Leucine zipper domain 252 297 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g0293 322 SMART brlzneu 248 320 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g0293 322 CDD bZIP_plant_BZIP46 252 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0781 HCH-Chr12:5041122 HCH13g0293 HCH-Chr13:1940985 1.10E-20 dispersed
HCH13g0293 HCH-Chr13:1940985 HCH8g0524 HCH-Chr8:41989245 7.20E-51 dispersed
HCH13g0293 HCH-Chr13:1940985 HCH4g0636 HCH-Chr4:4168066 3.70E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32785 PF00170 bZIP_1 9.20E-13 CL0018 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0293 K14432 - csv:101213915 520.776