Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0299 ATGGCTTCTGAACGGCCACTCTTGATTCCATCTCCAAGAGAAGTTGTTTCCAATTCTCACGATTTATCAATATCGAAATCGAAGTCGAAATCGGATTTCGACAAAGCTCGTCGGGTTTCTAGGATGGATTCTGACAGAGCAAGTATTGAACTTGCTCGCCAGTTTTCAGTGAATTCGAAATCTTCAGCTGGTCGTTCAATTCGTGAAGGAGTTTCTGGTAGAGGGGCGGATTCTGAAGCTTTGAGTATGTCTTTGAAGGAAATCAATGAAGAAGAAGCAAGGTTTGTTTACTTAAATGATCCCGAAAAGACAAATGAGAAGTTCGAATTTTCGAGGAATTCGATTCGTACCGCGAAGTATTCGTTACTTACTTTCCTGCCAAGGAATCTGTTTGAACAATTTCATAGAATTGCTTACATATATTTCCTTGTCATTGCGATTCTTAATCAACTTCCTCAGCTTGCGGTTTTCGGTCGGACCGTGTCGATTTTGCCTTTAGCTTTTGTGCTTTTAGTTACAGCAGTTAAAGATGCATATGAGGATTGGAGAAGGCATCGTTCTGATAGAATTGAGAACAATAGGTTAGCTTATGTTTTGGTAAATGATAAGTTCCAACTAAAGAAGTGGAAGGATATTAGAGTTGGTGAAATAATTAAGATTGATGCAAATGATAATATTCCTTGTGATATGGTTTTGCTCTCTACTAGTGATCCCACTGGGGTTGCATATGTGCAGACTCTTAATTTGGACGGGGAATCGAATTTGAAAACTAGATATGCGAAACAAGAGACAATGTCGAAGATGCCCGACAAGGAGGGCATTACTGGATTGATCAAATGTGAAAAACCTAACAGGAATATTTATGGATTTCATGCAAATATGGAAATTGATGGGAAGCGCCTGTCACTTGGACCCCCTAACATTGTTCTTCGTGGCTGTGAGCTCAAGAACACGAGCTGGGCTGTTGGTGTTGCTGTATATGCCGGCCGTGAGACCAAAGCCATGCTGAACAGTTCTGGAGCTCCATCTAAAAGAAGTCGGCTCGAGACCCGAATGAACAAGGAGATTATTATACTATCTTTCTTTCTTATTGCTTTGTGTATAGTTGTTTCTGTTTGTGCTGCTGTTTGGTTCAAGAGAAAGGAGGATGTGTTGGACGACTTACCTTATTTCAGAAAGGATGGTGATTTCTATGGATGGGCATTGGAAACATTTTTTGTATTTCTCATGTCGATCATCGTGTTTCAGATCATGATCCCCATTTCACTGTACATTTCAATGGAGCTTGTTCGCGTTGGCCAGGCTTATTTCATGATCGGAGACACTGAAATGTATGATGAAGCTTCAAATTCAAGATTCCAGTGCCGGGCTTTGAACATTAATGAGGATTTGGGACAAATAAGGTATGTGTTTTCAGACAAAACAGGCACCCTTACTGAGAATAAGATGGAATTTCAACGTGCGAGCATCTGGGGGGTTGATTACTGTGGTGAAGAGACCAATCGCCCAGAAGAACAGATTGGATACTCCCTTCAAGTGAACGGAACGGTTTTGAGACCAAAAATGAAAGTCAAAACAGATTCTGAGCTTTTACAGTTAACAAATAGTGGAAATCACAGTAGAGAAGGGAGATATATTCGTGATTTCTTCCTCGCATTGGCTGCGTGCAATACCATTGTTCCTCTCATTACAGAAAGTTCTGATCCTTCTGTGAAATTAATTGATTACCAAGGGGAGTCTCCAGATGAACAGGCGTTGGTTTATGCTGCTGCAGCGTATGGTTTTATGCTAATTGAACGAACTTCTGGTCATATAGTTATTGACATTCAAGGTGAAAGGCAAAGATATAATGTTTTGGGGATGCACGAGTTCGATAGTGACAGGAAACGGATGTCAGTGATATTGGGGTGCCCTGATGGGACCTTTAAAGTATTTGTAAAAGGTGCCGATACCTCCATGTTTAAGGTAATAGATGAAACTTTGAACAAGGAAATCATACAAGCGACTAAAGCCCATCTTCATGCATACTCCTCAGTGGGTCTCAGAACACTAGTTATTGGGATGAAAGAACTTAGTCCTCCAGATTTCGAGAAATGGCACTTGATGTTTGAGGAAGCAAGCACTGCTCTAATCGGCAGGGCTACTCTGCTTCGTAAGGTTGCTAGCAGTATAGAAAAAAATCTAAGCATATTGGGTGCCTCAGGCATTGAAGATAAACTTCAAAAGGGTGTTCCGGAAGCCATAGAATCTTTAAGAACTGCGGGAATCAAAGTATGGGTTCTGACTGGGGACAAGCAAGAAACTGCAATATCAATTGGTTACTCCTCAAAGCTCTTGACAAGCAAGATGACCCAAATTATAATTAACAGTAATTCAAAGGAATCGTGCAGAAGGAGTTTAGACGATGCAATAATCATGTCGAAGAGGCTTGCAACGGTGTCAGGAGTTACTCTGGACACTGGAAGAAGCACTGGAGTTGTAGCGACTTCGGTTGCCTTGATTATCGACGGTACCAGCCTTGTTTATATTCTTGACAGTGAACTGGAAAAACAGCTTTTTGAACTAGCTTGTAACTGTTCTGTGGTGTTATGCTGCCGGGTTGCCCCATTGCAGAAAGCTGGAATTGTCGCCCTTGTCAAAAAAAGAACTTCTGATATGACTCTGGCCATTGGTGATGGTGCTAATGATGTATCAATGATCCAAAAGGCTGATGTGGGCGTTGGTATCAGTGGTCTGGAGGGTAGGCAAGCCGTAATGGCATCGGATTTTGCCATGGGGCAGTTTAGATTCTTGGTTCCTCTTCTATTGGTCCATGGACATTGGAATTACCAGAGGATGGGCTACATGATTTTGTACAACTTTTACAGAAATGCAGTTTTTGTACTTGTTTTATTTTGGTATGTACTCTTCGCTGGTTTCTCTTTGACCACGGCGATAAATGAATGGAACAGCGTGTTATACTCTATAATCTATACTTGCTTTCCCACGATTGTTGTTGGAATTCTCGACAAGGACCTGGGAAAAACGACTCTTCTTAATTATCCTCAGCTCTATGGGGCTGGGCACAGACAGGAGAGTTATAACTCCACATTGTTTTGGTTAACAATGATCGACACCTTTTGGCAAAGTATTGTTGTTTTCTCTATCCCCCTCTTGGCATATTGGGCAAGCACCATTGATATTTCGAGTATAGGAGATCTCTGGCTACTTGCCGTGGTTACTGTGGTCAACTTTCACTTGGCAATGGACGTTATCCGATGGTCGTGGATCACGCATGCCGTGATTTGGGGATCCACTGTGGCAACTTTCATTTGTGTCATTGTCATCGATTCCATACCTTCGCTCTTCGGATACTGGGCCATATATCACATCGCGGGCACTCCTTCCTTTTGGCTATGTTTGTTAGCGATTATCGTAACGGCATTACTTCCTCGGTTTGTTGTAAAATACCTTTATCAATATTATAGTCCATGTGATATCCAGATAGCAAGAGAAGCTGACAAATTTGGAAGGTCAAGAGAACTGGGAGTTGTACAAAGAGAAATGATCCCAGTTCTAAACACTTGA 3567 41.72 MASERPLLIPSPREVVSNSHDLSISKSKSKSDFDKARRVSRMDSDRASIELARQFSVNSKSSAGRSIREGVSGRGADSEALSMSLKEINEEEARFVYLNDPEKTNEKFEFSRNSIRTAKYSLLTFLPRNLFEQFHRIAYIYFLVIAILNQLPQLAVFGRTVSILPLAFVLLVTAVKDAYEDWRRHRSDRIENNRLAYVLVNDKFQLKKWKDIRVGEIIKIDANDNIPCDMVLLSTSDPTGVAYVQTLNLDGESNLKTRYAKQETMSKMPDKEGITGLIKCEKPNRNIYGFHANMEIDGKRLSLGPPNIVLRGCELKNTSWAVGVAVYAGRETKAMLNSSGAPSKRSRLETRMNKEIIILSFFLIALCIVVSVCAAVWFKRKEDVLDDLPYFRKDGDFYGWALETFFVFLMSIIVFQIMIPISLYISMELVRVGQAYFMIGDTEMYDEASNSRFQCRALNINEDLGQIRYVFSDKTGTLTENKMEFQRASIWGVDYCGEETNRPEEQIGYSLQVNGTVLRPKMKVKTDSELLQLTNSGNHSREGRYIRDFFLALAACNTIVPLITESSDPSVKLIDYQGESPDEQALVYAAAAYGFMLIERTSGHIVIDIQGERQRYNVLGMHEFDSDRKRMSVILGCPDGTFKVFVKGADTSMFKVIDETLNKEIIQATKAHLHAYSSVGLRTLVIGMKELSPPDFEKWHLMFEEASTALIGRATLLRKVASSIEKNLSILGASGIEDKLQKGVPEAIESLRTAGIKVWVLTGDKQETAISIGYSSKLLTSKMTQIIINSNSKESCRRSLDDAIIMSKRLATVSGVTLDTGRSTGVVATSVALIIDGTSLVYILDSELEKQLFELACNCSVVLCCRVAPLQKAGIVALVKKRTSDMTLAIGDGANDVSMIQKADVGVGISGLEGRQAVMASDFAMGQFRFLVPLLLVHGHWNYQRMGYMILYNFYRNAVFVLVLFWYVLFAGFSLTTAINEWNSVLYSIIYTCFPTIVVGILDKDLGKTTLLNYPQLYGAGHRQESYNSTLFWLTMIDTFWQSIVVFSIPLLAYWASTIDISSIGDLWLLAVVTVVNFHLAMDVIRWSWITHAVIWGSTVATFICVIVIDSIPSLFGYWAIYHIAGTPSFWLCLLAIIVTALLPRFVVKYLYQYYSPCDIQIAREADKFGRSRELGVVQREMIPVLNT 1188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1991655 1996221 + evm.model.ptg000021l.299 HCH13g0299 556804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0299 1188 SUPERFAMILY HAD-like 458 931 IPR036412 -
HCH13g0299 1188 MobiDBLite consensus disorder prediction 25 45 - -
HCH13g0299 1188 SFLD p-type atpase 455 941 IPR044492 -
HCH13g0299 1188 SUPERFAMILY Calcium ATPase, transduction domain A 193 334 IPR008250 -
HCH13g0299 1188 Gene3D - 728 930 IPR023214 -
HCH13g0299 1188 SUPERFAMILY Calcium ATPase, transmembrane domain M 109 1156 IPR023298 -
HCH13g0299 1188 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 477 744 IPR023299 GO:0000166(InterPro)
HCH13g0299 1188 MobiDBLite consensus disorder prediction 1 45 - -
HCH13g0299 1188 Pfam E1-E2 ATPase 196 429 - -
HCH13g0299 1188 ProSitePatterns E1-E2 ATPases phosphorylation site. 473 479 IPR018303 -
HCH13g0299 1188 Gene3D - 574 713 IPR023299 GO:0000166(InterPro)
HCH13g0299 1188 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 86 1157 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
HCH13g0299 1188 FunFam Phospholipid-transporting ATPase 168 337 - -
HCH13g0299 1188 NCBIfam phospholipid-translocating P-type ATPase 110 1165 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
HCH13g0299 1188 Pfam Phospholipid-translocating ATPase N-terminal 96 163 IPR032631 -
HCH13g0299 1188 Gene3D - 165 337 - -
HCH13g0299 1188 CDD P-type_ATPase_APLT_Dnf-like 112 1050 - -
HCH13g0299 1188 PRINTS P-type cation-transporting ATPase superfamily signature 471 485 - -
HCH13g0299 1188 PRINTS P-type cation-transporting ATPase superfamily signature 890 909 - -
HCH13g0299 1188 Pfam Phospholipid-translocating P-type ATPase C-terminal 918 1157 IPR032630 -
HCH13g0299 1188 FunFam Phospholipid-transporting ATPase 727 930 - -
HCH13g0299 1188 SFLD Haloacid Dehalogenase 455 941 - -
HCH13g0299 1188 Pfam Cation transport ATPase (P-type) 578 655 - -
HCH13g0299 1188 FunFam Phospholipid-transporting ATPase 575 708 - -
HCH13g0299 1188 NCBIfam HAD-IC family P-type ATPase 860 974 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0299 HCH-Chr13:1991655 HCH3g0149 HCH-Chr3:953368 2.50E-189 dispersed
HCH13g0299 HCH-Chr13:1991655 HCH9g0840 HCH-Chr9:5944635 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0299 K14802 - csv:101212953 1890.93