Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0340 ATGGCAATGGCATCTTCCTCTTCAATTCCCTTTGATCCTTACCTTCTTCTAGCTGCTTCCATAGCTCTCTCAATCTCCACGTTAATTTACCTTCTTACCCTTAAAACCAATTCAAAGAAACCCAATCTCCCTCCCGGGCCTCCGGGTTGGCCCATCGTCGGTAACCTCTTTCAAGTAGCCCGCTCCGGAAAACACTTCTTCGAATACATAGAAGACATCCGACAAATTTACGGTTCCATTTTTACCCTCAAAATGGGTTCCCGGACTCTCATCATTTTATCCGACCCGAACATCATCCACGAAGCTTTGATTAAACGCGGCTCCACATTCGCTAGCCGCCCGACTGAAAACCCGACCCGAATCATTTTTAGCAGTAACAAATTCTCCGTTAACGCCGCCGTGTACGGCCCCGTTTGGCGGTCTCTTCGCCGGAATATGGTCGAGAATATGCTCTGCTCTAGCCGGTTAAAGGAATTTCGCGACGTCAGAAAAAACGCGATGGAGAAACTTATCGAACGGATTCGTACGGAAGCTGACGGCGAAGACGGCGCCGTGATGGTTTTGAAAAATTCACGATTCGCGGTTTTTTGTATTCTCTTAGCGATGTGTTTTGGTCAAGAAATGGAAGAGGAAACCGTTGAGAAAATGGATCAAATTTTGAAAACCGTTTTGATCACTGTTGATCCAAGGCTTGATGATTTTCTTCCGATTTTGAGTCCGTTTTTTAAAAAACAAAGAAATCGCGCCATGAAAGTAAGAAACGAACAGATTGAATTCGTCGTTCAATTTATCAATAATCGAAGAAAAGCAATCGCGAATCCAGGTTCAGATAAAAACGCTACTTCGTTCTCATATCTAGACACGCTTTTCGATCTCAAAATCGACGGCAGGAAATCCTCTCCGACGGATGCGGAATTAGTCACTCTCTGCTCGGAGTTTCTCAACGGCGGTACCGATACGACAGCAACCGCAATCGAATGGGGAATCGCGGAGCTGATTGCGAATCCGGAGATTCAGAATAAATTACACAGCGAGATCAAAGGAATAACCGGCGATCGGAAAGTCGACGAAACAGACGTCGAGAAAATGCCGTATTTACAAGCTGTAGTGAAGGAGTTGCTGAGAAAGCATCCGCCGACGTATTTTTCATTGACGCATTCGGTGATCGAACCGACGAAATTAGCCGGATACGACATTCCGATCGATGCGAATGTGGAGGTATATTTAGCAGGGATCAGTAACGATCCAAAGTTGTGGAAGAATCCAGAAAAATTTGATCCAGAAAGATTCATAAACGGCGATGAAGAAGCAGATATAACAGGAATTAACGGATTGAAAATGATTCCATTTGGAGTTGGAAGGAGGATTTGTCCTGGTTTAGGAATGGCTACGATTCATCTTCATCTGATGCTTGCTAGATTGGTACAAGAATTTGAATGGTCTTCTTTTCCATCGAATCGTGATTTGGATTTCACCAAGAGATATCAGTTTACTGTTATCATGAAGAATCCTCTGAGAGCCATTGCTAAAACCAGAGTTTGA 1542 44.1 MAMASSSSIPFDPYLLLAASIALSISTLIYLLTLKTNSKKPNLPPGPPGWPIVGNLFQVARSGKHFFEYIEDIRQIYGSIFTLKMGSRTLIILSDPNIIHEALIKRGSTFASRPTENPTRIIFSSNKFSVNAAVYGPVWRSLRRNMVENMLCSSRLKEFRDVRKNAMEKLIERIRTEADGEDGAVMVLKNSRFAVFCILLAMCFGQEMEEETVEKMDQILKTVLITVDPRLDDFLPILSPFFKKQRNRAMKVRNEQIEFVVQFINNRRKAIANPGSDKNATSFSYLDTLFDLKIDGRKSSPTDAELVTLCSEFLNGGTDTTATAIEWGIAELIANPEIQNKLHSEIKGITGDRKVDETDVEKMPYLQAVVKELLRKHPPTYFSLTHSVIEPTKLAGYDIPIDANVEVYLAGISNDPKLWKNPEKFDPERFINGDEEADITGINGLKMIPFGVGRRICPGLGMATIHLHLMLARLVQEFEWSSFPSNRDLDFTKRYQFTVIMKNPLRAIAKTRV 513
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 2281347 2282888 - evm.model.ptg000021l.340 HCH13g0340 556845
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0340 513 CDD CYP77_89 76 506 - -
HCH13g0340 513 Gene3D Cytochrome P450 31 511 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0340 513 Pfam Cytochrome P450 44 497 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0340 513 PRINTS P450 superfamily signature 457 468 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0340 513 PRINTS P450 superfamily signature 448 457 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0340 513 PRINTS P450 superfamily signature 368 379 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0340 513 PRINTS P450 superfamily signature 316 333 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0340 513 SUPERFAMILY Cytochrome P450 44 512 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0340 513 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 450 459 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
HCH13g0340 513 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 23 511 IPR051103 GO:0016020(PANTHER)|GO:0016709(PANTHER)
HCH13g0340 513 FunFam Cytochrome P450 family protein 37 513 - -
HCH13g0340 513 PRINTS E-class P450 group I signature 194 212 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0340 513 PRINTS E-class P450 group I signature 74 93 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0340 513 PRINTS E-class P450 group I signature 325 351 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0340 513 PRINTS E-class P450 group I signature 98 119 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0340 513 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0340 513 PRINTS E-class P450 group I signature 305 322 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0340 513 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0340 513 PRINTS E-class P450 group I signature 408 432 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0340 513 PRINTS E-class P450 group I signature 367 385 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0340 HCH-Chr13:2281347 HCH2g0356 HCH-Chr2:45288194 1.10E-96 dispersed
HCH14g0829 HCH-Chr14:36200641 HCH13g0340 HCH-Chr13:2281347 8.30E-126 transposed
HCH1g0727 HCH-Chr1:56086021 HCH13g0340 HCH-Chr13:2281347 3.30E-207 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0340 K21995 - csv:101206763 788.104