Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0347 ATGGCCGCGCCAAAGCAACGCACAACTCGATCAACGTCCCTCCGTGAAGCGCCGGAATTGGAGAAAATGGACGGCGCTTATAGCTGGGACGCTCTCGAATGGACCAAAATTGAGCCTGTTTCGCGGTCGGTTTCGCACGTGAAATTGGATTGCTTGCTTGAAGCCGAACAAGTGATCGCTGAGGGCAATGGTGTCGTTCTTGTGAATACCGATGAGGCGGGTACCTTGTTTGTGACCAATTTTCGTCTTCTATTTCTAAGTGAAGGAACTATGGTGACTATTTCCCTTGGAACTATACCACTGGCGGCAATTGAAAAATTCAACAAAATAGTTGTGAAGATGCATTCTGGCTCTCGCCAATCTGAAAAGTCTCCATCTCGACGACTTCTTCAGGTTATTGGAAAAGACATGAGAATAATTGTCTTCGGTTTCCGTCCTCGAACAAAACAGAGACGGAAAGTATATGATGCATTATTAAGGTGTATGAAGCCAGCAAGAATATGGGATCTATATGCGTTTAAGTCTGGACCTTCCAAATACAGCAATACAGACCCAAAGATTCGCTTGCTAAATGAGTATTTTCGACTTCTTGGAAAGGGTTCCCACCATGCATCAACAAGTATGATTGAAGGTGGATCATTTACAATATCCAATGAACTTTGGAGAATAACTAACATTAATTCTAGTTATACTCTGTGCTCGAGTTATCCATTTGCGTTGATTGTTCCAAAACACATAAGTGATGAAGAAATGTTGCAGTCTTCTACTTTTCGTGCTAGATGTCGCTTGCCTGTAGTCTCGTGGTGCAATCCTGATACTGGAGCTGTTCTTGCACGTTCATCTCAACCCTTAGTTGGTCTTATGATGAATATGAGAAGCAATACTGATGAAAAGCTTGTTGCTTCACTTTGCTCACATCTTGCTGGTTCTCAAGGATCACGCAGGAAGCTGTATATAGCTGATGCAAGGCCCAGAAAAAATGCTTTAGCAAATGGAGCTATGGGAGGTGGTTCAGAGTCATCGGCCAATTATTCTCAATCTGAGATAGTCTTTTTTGGGATTGACAACATACATGCAATGAGGGAGAGTCTTACTCGGCTCAGAGAGTACTTAGATACTCATGGTGCAACGTCATCTGATGGAATGTCATCATTCTTGAGACATGGCGGATGGACATGGGGTGGAGGTAATCTTAGTAGTATGTCTGCCTCTGTATCAACTCTTGGAGATAGTGGCTGGTTAATACATGTTCAAAGCGTCTTGGCTGGGTCAGCATGGATTGCTGCACGTGTTGCTTTGGAATCTGCAACGGTGCTTGTGCATTGCAGTGATGGCTGGGATAGAACAACACAATTGGTTTCACTTGCTAGCTTGCTGCTTGATCCCTACTACCGGACATTCACTGGGTTTCAGGCACTGGTTGAAAAGGATTGGTTGGCATTTGGTCACCCTTTCTCCGATCGTGCTGGTATGCCAACTGTATCAGGAAGTGGCAACATTCCATTTGAACTCTCTAGACAGTCTTCTTCTGGAAATTTTTCATCTTCTCCTATGCGCCAGTCATCAGGATCATTCACATCTGCGGCTTTCAGTCCTCCTCAAGCACAAACATCTAACAACACTTCTCCTATATTTTTACAGTGGGTTGATTGTGTTTCACAACTTCTGCGGATGTACCCTTTTGCTTTTGAGTTTTCCTCAGCATTTCTGGTGGACCTGTTGGATTGTATGCTTTCCTATCGCTTTGGGAACTTCTTGTGCAATAGCGAGAAGGAGAGGCAGCAATGTGCTGTTTCGGAAGTTTGTGGCTGTTTATGGGCATATTTGGCTGATTTACGAGTTTTAGAAGGAAGTTCACATGTGCATTATAACCTCTTCTATGATCCATTAAAACATGTGGGTCCTCTATTACCTCCTGCAGCCGCATTAGCTCCAACTCTCTGGCCCCAGTTCCATCTTCGTTGGGCCTGTCCGTCAGAATCCCAAGCTGGGGAACTTGAAGTGAGATGCAGGAAAATGGCTATAGAATTATCTGGATTGCAGAAGGACAAAGAAATGGCGGAGAGGAAAGCCCAAGAGACGACCATTGCCATGGAATCATTAAAAGCAGAGTTACAACACGAGAAACAGCTGAGCATTTCGGCTAGGAACTTAGCAAAAAGTGCTAGCAAAGAAAGTGAAGCCATAAAGAGAGCAATTCAGTCTCTAGGGTGCAAAGTTCACGTCTCTGGTAATGGTTATTGTACCATTGATGTTGAGGGTAACGGTAGCCCAATGAAACCCAGCCTTTCTGCCTCGAAACGAGATTCAGATTGTTCATTGCAGGACGGTGAGAAAAAGGACCTCTCCCTCTCAATCACAGTTATGGAAGATGATGTACCAAATAACCCACTCAGTCACATATGCGAAACTCTTTGCCCGTTGCGCACTCGAGATGGAGGATGCCGGTGGCCTGACGCTGGTTGTGCTCAATTGGGTAGCCAATTTATTGGACTAAAGGCTAATTTTGATGCATTCGACCAGCTATCCATATATGATGGTTATTTCAAACCAGAGTGA 2559 44.35 MAAPKQRTTRSTSLREAPELEKMDGAYSWDALEWTKIEPVSRSVSHVKLDCLLEAEQVIAEGNGVVLVNTDEAGTLFVTNFRLLFLSEGTMVTISLGTIPLAAIEKFNKIVVKMHSGSRQSEKSPSRRLLQVIGKDMRIIVFGFRPRTKQRRKVYDALLRCMKPARIWDLYAFKSGPSKYSNTDPKIRLLNEYFRLLGKGSHHASTSMIEGGSFTISNELWRITNINSSYTLCSSYPFALIVPKHISDEEMLQSSTFRARCRLPVVSWCNPDTGAVLARSSQPLVGLMMNMRSNTDEKLVASLCSHLAGSQGSRRKLYIADARPRKNALANGAMGGGSESSANYSQSEIVFFGIDNIHAMRESLTRLREYLDTHGATSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIAARVALESATVLVHCSDGWDRTTQLVSLASLLLDPYYRTFTGFQALVEKDWLAFGHPFSDRAGMPTVSGSGNIPFELSRQSSSGNFSSSPMRQSSGSFTSAAFSPPQAQTSNNTSPIFLQWVDCVSQLLRMYPFAFEFSSAFLVDLLDCMLSYRFGNFLCNSEKERQQCAVSEVCGCLWAYLADLRVLEGSSHVHYNLFYDPLKHVGPLLPPAAALAPTLWPQFHLRWACPSESQAGELEVRCRKMAIELSGLQKDKEMAERKAQETTIAMESLKAELQHEKQLSISARNLAKSASKESEAIKRAIQSLGCKVHVSGNGYCTIDVEGNGSPMKPSLSASKRDSDCSLQDGEKKDLSLSITVMEDDVPNNPLSHICETLCPLRTRDGGCRWPDAGCAQLGSQFIGLKANFDAFDQLSIYDGYFKPE 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2315937 2327034 + evm.model.ptg000021l.347 HCH13g0347 556852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0347 852 SMART gram2001c 45 111 IPR004182 -
HCH13g0347 852 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 214 656 IPR029021 -
HCH13g0347 852 PANTHER MYOTUBULARIN-RELATED 7 783 IPR030564 GO:0004438(PANTHER)|GO:0106018(PANTHER)
HCH13g0347 852 CDD PTP-MTM-like 261 554 - -
HCH13g0347 852 ProSiteProfiles Myotubularin phosphatase domain. 183 652 IPR010569 -
HCH13g0347 852 Pfam Myotubularin-like phosphatase domain 215 594 IPR010569 -
HCH13g0347 852 MobiDBLite consensus disorder prediction 507 537 - -
HCH13g0347 852 ProSitePatterns Tyrosine specific protein phosphatases active site. 440 450 IPR016130 GO:0016311(InterPro)
HCH13g0347 852 Coils Coil 670 711 - -
HCH13g0347 852 Gene3D - 63 162 IPR011993 -
HCH13g0347 852 SUPERFAMILY PH domain-like 51 174 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0347 K18081 - csv:101204839 1461.43