Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0347 ATGGCCGCGCCAAAGCAACGCACAACTCGATCAACGTCCCTCCGTGAAGCGCCGGAATTGGAGAAAATGGACGGCGCTTATAGCTGGGACGCTCTCGAATGGACCAAAATTGAGCCTGTTTCGCGGTCGGTTTCGCACGTGAAATTGGATTGCTTGCTTGAAGCCGAACAAGTGATCGCTGAGGGCAATGGTGTCGTTCTTGTGAATACCGATGAGGCGGGTACCTTGTTTGTGACCAATTTTCGTCTTCTATTTCTAAGTGAAGGAACTATGGTGACTATTTCCCTTGGAACTATACCACTGGCGGCAATTGAAAAATTCAACAAAATAGTTGTGAAGATGCATTCTGGCTCTCGCCAATCTGAAAAGTCTCCATCTCGACGACTTCTTCAGGTTATTGGAAAAGACATGAGAATAATTGTCTTCGGTTTCCGTCCTCGAACAAAACAGAGACGGAAAGTATATGATGCATTATTAAGGTGTATGAAGCCAGCAAGAATATGGGATCTATATGCGTTTAAGTCTGGACCTTCCAAATACAGCAATACAGACCCAAAGATTCGCTTGCTAAATGAGTATTTTCGACTTCTTGGAAAGGGTTCCCACCATGCATCAACAAGTATGATTGAAGGTGGATCATTTACAATATCCAATGAACTTTGGAGAATAACTAACATTAATTCTAGTTATACTCTGTGCTCGAGTTATCCATTTGCGTTGATTGTTCCAAAACACATAAGTGATGAAGAAATGTTGCAGTCTTCTACTTTTCGTGCTAGATGTCGCTTGCCTGTAGTCTCGTGGTGCAATCCTGATACTGGAGCTGTTCTTGCACGTTCATCTCAACCCTTAGTTGGTCTTATGATGAATATGAGAAGCAATACTGATGAAAAGCTTGTTGCTTCACTTTGCTCACATCTTGCTGGTTCTCAAGGATCACGCAGGAAGCTGTATATAGCTGATGCAAGGCCCAGAAAAAATGCTTTAGCAAATGGAGCTATGGGAGGTGGTTCAGAGTCATCGGCCAATTATTCTCAATCTGAGATAGTCTTTTTTGGGATTGACAACATACATGCAATGAGGGAGAGTCTTACTCGGCTCAGAGAGTACTTAGATACTCATGGTGCAACGTCATCTGATGGAATGTCATCATTCTTGAGACATGGCGGATGGACATGGGGTGGAGGTAATCTTAGTAGTATGTCTGCCTCTGTATCAACTCTTGGAGATAGTGGCTGGTTAATACATGTTCAAAGCGTCTTGGCTGGGTCAGCATGGATTGCTGCACGTGTTGCTTTGGAATCTGCAACGGTGCTTGTGCATTGCAGTGATGGCTGGGATAGAACAACACAATTGGTTTCACTTGCTAGCTTGCTGCTTGATCCCTACTACCGGACATTCACTGGGTTTCAGGCACTGGTTGAAAAGGATTGGTTGGCATTTGGTCACCCTTTCTCCGATCGTGCTGGTATGCCAACTGTATCAGGAAGTGGCAACATTCCATTTGAACTCTCTAGACAGTCTTCTTCTGGAAATTTTTCATCTTCTCCTATGCGCCAGTCATCAGGATCATTCACATCTGCGGCTTTCAGTCCTCCTCAAGCACAAACATCTAACAACACTTCTCCTATATTTTTACAGTGGGTTGATTGTGTTTCACAACTTCTGCGGATGTACCCTTTTGCTTTTGAGTTTTCCTCAGCATTTCTGGTGGACCTGTTGGATTGTATGCTTTCCTATCGCTTTGGGAACTTCTTGTGCAATAGCGAGAAGGAGAGGCAGCAATGTGCTGTTTCGGAAGTTTGTGGCTGTTTATGGGCATATTTGGCTGATTTACGAGTTTTAGAAGGAAGTTCACATGTGCATTATAACCTCTTCTATGATCCATTAAAACATGTGGGTCCTCTATTACCTCCTGCAGCCGCATTAGCTCCAACTCTCTGGCCCCAGTTCCATCTTCGTTGGGCCTGTCCGTCAGAATCCCAAGCTGGGGAACTTGAAGTGAGATGCAGGAAAATGGCTATAGAATTATCTGGATTGCAGAAGGACAAAGAAATGGCGGAGAGGAAAGCCCAAGAGACGACCATTGCCATGGAATCATTAAAAGCAGAGTTACAACACGAGAAACAGCTGAGCATTTCGGCTAGGAACTTAGCAAAAAGTGCTAGCAAAGAAAGTGAAGCCATAAAGAGAGCAATTCAGTCTCTAGGGTGCAAAGTTCACGTCTCTGGTAATGGTTATTGTACCATTGATGTTGAGGGTAACGGTAGCCCAATGAAACCCAGCCTTTCTGCCTCGAAACGAGATTCAGATTGTTCATTGCAGGACGGTGAGAAAAAGGACCTCTCCCTCTCAATCACAGTTATGGAAGATGATGTACCAAATAACCCACTCAGTCACATATGCGAAACTCTTTGCCCGTTGCGCACTCGAGATGGAGGATGCCGGTGGCCTGACGCTGGTTGTGCTCAATTGGGTAGCCAATTTATTGGACTAAAGGCTAATTTTGATGCATTCGACCAGCTATCCATATATGATGGTTATTTCAAACCAGAGTGA 2559 44.35 MAAPKQRTTRSTSLREAPELEKMDGAYSWDALEWTKIEPVSRSVSHVKLDCLLEAEQVIAEGNGVVLVNTDEAGTLFVTNFRLLFLSEGTMVTISLGTIPLAAIEKFNKIVVKMHSGSRQSEKSPSRRLLQVIGKDMRIIVFGFRPRTKQRRKVYDALLRCMKPARIWDLYAFKSGPSKYSNTDPKIRLLNEYFRLLGKGSHHASTSMIEGGSFTISNELWRITNINSSYTLCSSYPFALIVPKHISDEEMLQSSTFRARCRLPVVSWCNPDTGAVLARSSQPLVGLMMNMRSNTDEKLVASLCSHLAGSQGSRRKLYIADARPRKNALANGAMGGGSESSANYSQSEIVFFGIDNIHAMRESLTRLREYLDTHGATSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIAARVALESATVLVHCSDGWDRTTQLVSLASLLLDPYYRTFTGFQALVEKDWLAFGHPFSDRAGMPTVSGSGNIPFELSRQSSSGNFSSSPMRQSSGSFTSAAFSPPQAQTSNNTSPIFLQWVDCVSQLLRMYPFAFEFSSAFLVDLLDCMLSYRFGNFLCNSEKERQQCAVSEVCGCLWAYLADLRVLEGSSHVHYNLFYDPLKHVGPLLPPAAALAPTLWPQFHLRWACPSESQAGELEVRCRKMAIELSGLQKDKEMAERKAQETTIAMESLKAELQHEKQLSISARNLAKSASKESEAIKRAIQSLGCKVHVSGNGYCTIDVEGNGSPMKPSLSASKRDSDCSLQDGEKKDLSLSITVMEDDVPNNPLSHICETLCPLRTRDGGCRWPDAGCAQLGSQFIGLKANFDAFDQLSIYDGYFKPE 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2315937 2327034 + evm.model.ptg000021l.347 HCH13g0347 556852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0347 852 SMART gram2001c 45 111 IPR004182 -
HCH13g0347 852 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 214 656 IPR029021 -
HCH13g0347 852 PANTHER MYOTUBULARIN-RELATED 7 783 IPR030564 GO:0004438(PANTHER)|GO:0106018(PANTHER)
HCH13g0347 852 CDD PTP-MTM-like 261 554 - -
HCH13g0347 852 ProSiteProfiles Myotubularin phosphatase domain. 183 652 IPR010569 -
HCH13g0347 852 Pfam Myotubularin-like phosphatase domain 215 594 IPR010569 -
HCH13g0347 852 MobiDBLite consensus disorder prediction 507 537 - -
HCH13g0347 852 ProSitePatterns Tyrosine specific protein phosphatases active site. 440 450 IPR016130 GO:0016311(InterPro)
HCH13g0347 852 Coils Coil 670 711 - -
HCH13g0347 852 Gene3D - 63 162 IPR011993 -
HCH13g0347 852 SUPERFAMILY PH domain-like 51 174 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0347 K18081 - - csv:101204839 1461.43
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH14g0309 . 35 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 8.6e-189 657.1
HCH7g0674 . 38 589 Protein tyrosine phosphatase (PTP) family AT3G50110 61.2 3.0e-186 648.7
HCH9g0272 . 1 394 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 2.1e-156 548.9
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT3G10550 68.3 0.0e+00 1161.4
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1109.4
HCH8g0927 . 1 1162 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 0.0e+00 1087.8
HCH8g1275 . 1 356 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 8.7e-116 415.6
HCH12g1470 . 4 325 Protein tyrosine phosphatase (PTP) family AT1G71860 67.6 1.5e-123 439.5
HCH8g1518 . 36 928 Protein tyrosine phosphatase (PTP) family AT5G23720 63.3 2.7e-308 1054.7
HCH6g1620 . 25 172 Protein tyrosine phosphatase (PTP) family AT3G06110 56.8 2.6e-44 175.3
HCH7g0076 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 75.7 3.9e-70 261.2
HCH1g0714 . 101 378 Protein tyrosine phosphatase (PTP) family AT3G52180 71.6 2.8e-115 411.8
HCH1g0316 . 7 281 Protein tyrosine phosphatase (PTP) family AT3G10940 70.8 3.7e-115 411.4
HCH9g0145 . 143 590 Protein tyrosine phosphatase (PTP) family AT3G01510 68.3 3.8e-191 664.5
HCH2g0875 . 64 225 Protein tyrosine phosphatase (PTP) family AT2G32960 66.3 1.7e-71 266.2
HCH7g0082 . 43 226 Protein tyrosine phosphatase (PTP) family AT2G32960 67.0 2.8e-69 258.8
HCH6g1038 . 1 335 Protein tyrosine phosphatase (PTP) family AT2G35680 54.4 1.1e-97 353.6
HCH10g0513 . 18 229 Protein tyrosine phosphatase (PTP) family AT2G35680 61.0 5.0e-79 291.6
HCH10g0513 . 28 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 9.1e-46 180.3
HCH2g0875 . 62 225 Protein tyrosine phosphatase (PTP) family AT4G03960 76.8 1.7e-74 275.8
HCH7g0082 . 38 226 Protein tyrosine phosphatase (PTP) family AT4G03960 63.0 3.8e-66 248.1
HCH8g0272 . 12 167 Protein tyrosine phosphatase (PTP) family AT4G03960 59.1 1.4e-52 203.0
HCH8g0272 . 1 193 Protein tyrosine phosphatase (PTP) family AT3G02800 70.1 8.9e-79 290.0
HCH2g0875 . 61 209 Protein tyrosine phosphatase (PTP) family AT3G02800 64.4 2.3e-55 212.2
HCH7g0082 . 32 223 Protein tyrosine phosphatase (PTP) family AT3G02800 51.0 9.2e-52 200.3
HCH1g0486 . 1 186 Protein tyrosine phosphatase (PTP) family AT3G55270 65.1 8.1e-64 242.3
HCH9g0272 . 1 394 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 2.1e-156 548.9
HCH7g0674 . 8 589 Protein tyrosine phosphatase (PTP) family AT3G19420 67.6 9.4e-225 776.5
HCH14g0309 . 33 604 Protein tyrosine phosphatase (PTP) family AT3G19420 62.0 5.2e-199 691.0
HCH14g0309 . 35 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 8.6e-189 657.1
HCH7g0674 . 38 589 Protein tyrosine phosphatase (PTP) family AT3G50110 61.2 3.0e-186 648.7
HCH8g0927 . 1 1162 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 0.0e+00 1087.8
HCH8g1275 . 1 356 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 8.7e-116 415.6
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT3G10550 68.3 0.0e+00 1161.4
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1109.4
HCH2g1250 . 60 240 Protein tyrosine phosphatase (PTP) family AT3G44620 64.9 5.1e-71 264.6
HCH6g1102 . 12 322 Protein tyrosine phosphatase (PTP) family AT2G35320 62.4 1.5e-114 409.5
HCH9g0750 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.8 1.1e-279 959.1
HCH9g0750 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.9 4.5e-257 884.0
HCH9g0750 . 78 673 Protein tyrosine phosphatase (PTP) family AT5G28210 55.2 1.3e-181 633.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007488 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 3 1 1 35