Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0367 ATGCTTGCTACCACTGGCATTCTCCTAATCTTGCTTTTTAGCTCTTCTCTGATTCCTTTTTCCATAGTAGCTCTCAATCTCACTCTGCCACATCCACTCCTGGATCCTGAATCTATTGCTCATGAAGTTCAGAGGAAAGTGAACAATTCATTATCCAGAAGACAAACCCTCTCAATCCAAACGAACTCCCAATCCTCCTCCTCATGCCAAACCGGCAACCCCATCGACGATTGCTGGCGTTGCGACTCAAACTGGCAAACCAACCGCCAACGACTCGCCGATTGTGGCATCGGCTTCGGCCGTGCCGCAATGGGAGGCAAAGGCGGGCAGATCTACATCGTCACCGACTCCTCTGATACCGACCCCGTAAACCCTCGCCCCGGCACTCTCCGCTTCGCCGTAATCCAAGACGAACCCTTGTGGATAATCTTCTCCGCAGACATGACTATCAAACTCAAATACGAACTCATGCTCAATAGCTACAAAACCCTAGACGGCCGCGGCGCCAACATCCACATTACTGGTTACGGCTGCATCACTCTCCAATACATCTCGAACGTAATAATCCACAACATCAACATTCATAACTGTAAACCTAACGGAAACACAAACATTCGTGCCAGCCCGACGCACGTCGGATTCCGGGGGAAATCCGACGGCGACGGGATATCGATATTCGCGTCGAGGAACGTTTGGATCGATCATTGCTCGTTATCGTATTGTACGGACGGATTGATCGATGCGATAATGGGATCGACGGGGATAACGATATCGAACAATTACTTTTCGAATCACGACGAGGTGATGTTGCTAGGGCACGACGATGGGTTCTTGCCGGATTCAGGGATGCAAGTGACGATAGCGTTTAATTTGTTCGGAGAAAGATTGGTTCAGAGAATGCCGCGGTGCCGGCGAGGGTATATTCATGTGGTGAATAACGAGTTTAGATCGTGGGAGATGTATGCGATTGGCGGGAGCGGGAATCCGACGATTAACAGTCAGGGGAATCGCTATATTGCTCCCATGAACCCTAATGCCAAAGAGGTGACAAAGCGCGTGGACACAAATGCTGCGGATTGGACGCAGTGGAACTGGAGGTCGGAGGGGGATGTAATGGTAAACGGGGCGTTTTTTGTGCCGTCCGGCGATGGACTTACCAATATGTACGTGAAGGCGTCGAGTGTGGAGCCCAAGTCCGCCGGACTCGTTGATCAGCTCACTCTCAATGCTGGCGTCTTCGGCGGTCCGAGGGAGAATAGACAGAGCGGTTCATATCCAGGAGACGGTGGTGAAACCTCCTCCAGTTCGAGGGCCAGTGGCGGCGATGGCGGTGGCGACTATTTTGGAATGATCTTCGGGGGTGGTGCGAGCAGTGCCCCACCACGATTGCCGCCATTCTCAACTGTTAACTTACTCATTCTAACTTTGCTTACAAGTTTAATTCTGTACACGAAGGATGTTTTACTACCATTGACAATGTCATTATTATTGTAG 1494 50.74 MLATTGILLILLFSSSLIPFSIVALNLTLPHPLLDPESIAHEVQRKVNNSLSRRQTLSIQTNSQSSSSCQTGNPIDDCWRCDSNWQTNRQRLADCGIGFGRAAMGGKGGQIYIVTDSSDTDPVNPRPGTLRFAVIQDEPLWIIFSADMTIKLKYELMLNSYKTLDGRGANIHITGYGCITLQYISNVIIHNINIHNCKPNGNTNIRASPTHVGFRGKSDGDGISIFASRNVWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSNHDEVMLLGHDDGFLPDSGMQVTIAFNLFGERLVQRMPRCRRGYIHVVNNEFRSWEMYAIGGSGNPTINSQGNRYIAPMNPNAKEVTKRVDTNAADWTQWNWRSEGDVMVNGAFFVPSGDGLTNMYVKASSVEPKSAGLVDQLTLNAGVFGGPRENRQSGSYPGDGGETSSSSRASGGDGGGDYFGMIFGGGASSAPPRLPPFSTVNLLILTLLTSLILYTKDVLLPLTMSLLL 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2441338 2444519 + evm.model.ptg000021l.367 HCH13g0367 556872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0367 497 MobiDBLite consensus disorder prediction 413 440 - -
HCH13g0367 497 PANTHER PECTATE LYASE 18-RELATED 31 413 IPR045032 GO:0030570(InterPro)
HCH13g0367 497 SMART amb_all 147 344 IPR002022 -
HCH13g0367 497 MobiDBLite consensus disorder prediction 425 440 - -
HCH13g0367 497 FunFam Pectate lyase 72 414 - -
HCH13g0367 497 Gene3D - 72 414 IPR012334 -
HCH13g0367 497 PRINTS Pollen allergen Amb family signature 155 171 IPR018082 -
HCH13g0367 497 PRINTS Pollen allergen Amb family signature 363 387 IPR018082 -
HCH13g0367 497 PRINTS Pollen allergen Amb family signature 219 240 IPR018082 -
HCH13g0367 497 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
HCH13g0367 497 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
HCH13g0367 497 PRINTS Pollen allergen Amb family signature 392 415 IPR018082 -
HCH13g0367 497 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
HCH13g0367 497 PRINTS Pollen allergen Amb family signature 119 144 IPR018082 -
HCH13g0367 497 SUPERFAMILY Pectin lyase-like 73 412 IPR011050 -
HCH13g0367 497 Pfam Pectate lyase 155 336 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0367 HCH-Chr13:2441338 HCH5g0167 HCH-Chr5:965687 2.40E-146 dispersed
HCH9g0631 HCH-Chr9:4201793 HCH13g0367 HCH-Chr13:2441338 1.00E-40 transposed
HCH1g0701 HCH-Chr1:55861148 HCH13g0367 HCH-Chr13:2441338 3.20E-191 wgd
HCH13g0367 HCH-Chr13:2441338 HCH9g0554 HCH-Chr9:3632306 3.10E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0367 K01728 - csv:101207535 738.413