Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH13g0367 | ATGCTTGCTACCACTGGCATTCTCCTAATCTTGCTTTTTAGCTCTTCTCTGATTCCTTTTTCCATAGTAGCTCTCAATCTCACTCTGCCACATCCACTCCTGGATCCTGAATCTATTGCTCATGAAGTTCAGAGGAAAGTGAACAATTCATTATCCAGAAGACAAACCCTCTCAATCCAAACGAACTCCCAATCCTCCTCCTCATGCCAAACCGGCAACCCCATCGACGATTGCTGGCGTTGCGACTCAAACTGGCAAACCAACCGCCAACGACTCGCCGATTGTGGCATCGGCTTCGGCCGTGCCGCAATGGGAGGCAAAGGCGGGCAGATCTACATCGTCACCGACTCCTCTGATACCGACCCCGTAAACCCTCGCCCCGGCACTCTCCGCTTCGCCGTAATCCAAGACGAACCCTTGTGGATAATCTTCTCCGCAGACATGACTATCAAACTCAAATACGAACTCATGCTCAATAGCTACAAAACCCTAGACGGCCGCGGCGCCAACATCCACATTACTGGTTACGGCTGCATCACTCTCCAATACATCTCGAACGTAATAATCCACAACATCAACATTCATAACTGTAAACCTAACGGAAACACAAACATTCGTGCCAGCCCGACGCACGTCGGATTCCGGGGGAAATCCGACGGCGACGGGATATCGATATTCGCGTCGAGGAACGTTTGGATCGATCATTGCTCGTTATCGTATTGTACGGACGGATTGATCGATGCGATAATGGGATCGACGGGGATAACGATATCGAACAATTACTTTTCGAATCACGACGAGGTGATGTTGCTAGGGCACGACGATGGGTTCTTGCCGGATTCAGGGATGCAAGTGACGATAGCGTTTAATTTGTTCGGAGAAAGATTGGTTCAGAGAATGCCGCGGTGCCGGCGAGGGTATATTCATGTGGTGAATAACGAGTTTAGATCGTGGGAGATGTATGCGATTGGCGGGAGCGGGAATCCGACGATTAACAGTCAGGGGAATCGCTATATTGCTCCCATGAACCCTAATGCCAAAGAGGTGACAAAGCGCGTGGACACAAATGCTGCGGATTGGACGCAGTGGAACTGGAGGTCGGAGGGGGATGTAATGGTAAACGGGGCGTTTTTTGTGCCGTCCGGCGATGGACTTACCAATATGTACGTGAAGGCGTCGAGTGTGGAGCCCAAGTCCGCCGGACTCGTTGATCAGCTCACTCTCAATGCTGGCGTCTTCGGCGGTCCGAGGGAGAATAGACAGAGCGGTTCATATCCAGGAGACGGTGGTGAAACCTCCTCCAGTTCGAGGGCCAGTGGCGGCGATGGCGGTGGCGACTATTTTGGAATGATCTTCGGGGGTGGTGCGAGCAGTGCCCCACCACGATTGCCGCCATTCTCAACTGTTAACTTACTCATTCTAACTTTGCTTACAAGTTTAATTCTGTACACGAAGGATGTTTTACTACCATTGACAATGTCATTATTATTGTAG | 1494 | 50.74 | MLATTGILLILLFSSSLIPFSIVALNLTLPHPLLDPESIAHEVQRKVNNSLSRRQTLSIQTNSQSSSSCQTGNPIDDCWRCDSNWQTNRQRLADCGIGFGRAAMGGKGGQIYIVTDSSDTDPVNPRPGTLRFAVIQDEPLWIIFSADMTIKLKYELMLNSYKTLDGRGANIHITGYGCITLQYISNVIIHNINIHNCKPNGNTNIRASPTHVGFRGKSDGDGISIFASRNVWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSNHDEVMLLGHDDGFLPDSGMQVTIAFNLFGERLVQRMPRCRRGYIHVVNNEFRSWEMYAIGGSGNPTINSQGNRYIAPMNPNAKEVTKRVDTNAADWTQWNWRSEGDVMVNGAFFVPSGDGLTNMYVKASSVEPKSAGLVDQLTLNAGVFGGPRENRQSGSYPGDGGETSSSSRASGGDGGGDYFGMIFGGGASSAPPRLPPFSTVNLLILTLLTSLILYTKDVLLPLTMSLLL | 497 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 2441338 | 2444519 | + | evm.model.ptg000021l.367 | HCH13g0367 | 556872 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH13g0367 | 497 | MobiDBLite | consensus disorder prediction | 413 | 440 | - | - | |
HCH13g0367 | 497 | PANTHER | PECTATE LYASE 18-RELATED | 31 | 413 | IPR045032 | GO:0030570(InterPro) | |
HCH13g0367 | 497 | SMART | amb_all | 147 | 344 | IPR002022 | - | |
HCH13g0367 | 497 | MobiDBLite | consensus disorder prediction | 425 | 440 | - | - | |
HCH13g0367 | 497 | FunFam | Pectate lyase | 72 | 414 | - | - | |
HCH13g0367 | 497 | Gene3D | - | 72 | 414 | IPR012334 | - | |
HCH13g0367 | 497 | PRINTS | Pollen allergen Amb family signature | 155 | 171 | IPR018082 | - | |
HCH13g0367 | 497 | PRINTS | Pollen allergen Amb family signature | 363 | 387 | IPR018082 | - | |
HCH13g0367 | 497 | PRINTS | Pollen allergen Amb family signature | 219 | 240 | IPR018082 | - | |
HCH13g0367 | 497 | PRINTS | Pollen allergen Amb family signature | 321 | 340 | IPR018082 | - | |
HCH13g0367 | 497 | PRINTS | Pollen allergen Amb family signature | 299 | 318 | IPR018082 | - | |
HCH13g0367 | 497 | PRINTS | Pollen allergen Amb family signature | 392 | 415 | IPR018082 | - | |
HCH13g0367 | 497 | PRINTS | Pollen allergen Amb family signature | 95 | 112 | IPR018082 | - | |
HCH13g0367 | 497 | PRINTS | Pollen allergen Amb family signature | 119 | 144 | IPR018082 | - | |
HCH13g0367 | 497 | SUPERFAMILY | Pectin lyase-like | 73 | 412 | IPR011050 | - | |
HCH13g0367 | 497 | Pfam | Pectate lyase | 155 | 336 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g0367 | HCH-Chr13:2441338 | HCH5g0167 | HCH-Chr5:965687 | 2.40E-146 | dispersed | |
HCH9g0631 | HCH-Chr9:4201793 | HCH13g0367 | HCH-Chr13:2441338 | 1.00E-40 | transposed | |
HCH1g0701 | HCH-Chr1:55861148 | HCH13g0367 | HCH-Chr13:2441338 | 3.20E-191 | wgd | |
HCH13g0367 | HCH-Chr13:2441338 | HCH9g0554 | HCH-Chr9:3632306 | 3.10E-170 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH13g0367 | K01728 | - | csv:101207535 | 738.413 |