Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0395 ATGAATAGAGGAATGGATTCTGTATTAGAGCCAATGAGGATCCCAGAGAAGTATTTAGATTCTCAGCTATGGCATGCTTGTGCTGGTGGGATGGTTCAATTGCCACCCATTAACTCAAAGGTATTCTACTTTCCCCAGGGTCACGCCGAGCACGCCCGGGGGATCGTTGATTTCGGGAATCATCGAATTCCTCCGTTTGTTCTTTGCAGGCTATCTGCCGTTAGATATATGGCAGATCCTGAAACTGATGAAGTGTTTGCTAAGATGAGGTTGATTCCACTGAGAAACAATGACTTTGAGATTGAAGATGCTGATGAGCTTCTAGGACACCACGATATTAGGAGTCAGGAAAAACCTGCCTCCTTTGCCAAGACATTGACACAATCTGATGCAAACAATGGTGGAGGATTCTCCGTGCCTCGATATTGTGCGGAGACTATCTTTCCGCGCTTAGATTACTCAGCAGAGCCTCCTGTTCAGACCATTCTTGCAAAGGATGTACATGGCGGGACTTGGAAGTTTAGGCATATTTATAGAGGGACTCCACGCCGCCACCTTTTGACGACAGGGTGGAGTAATTTTGTGAACCAGAAGAAACTTGTTGCCGGGGACTCAATTGTTTTTCTTAGGGCGGAAAATGGCGATCTTTGTGTCGGAGTAAGGCGAGCCAAGAAGGGAATTGGTGGTGGAATAGATTACTCATCTGGATGGAATGCACCAAATGCAAATTGTGGCTCTCCACTTATGGGGTATCCTGAATTTATGAGGGATAACGAATGTAGATTGATGAGAAGAAATCCAAAAGGGAATTTAAATGGAAAAGTGAAGACGGAATCTGTCTTGGAAGCTGCAATTCTTGCTGCCAGTGGTAAGCCCTTTGAGGTTGTGTATTACCCTTGTGCTGGCACTCCAGAGTTTTGTGTTAAGGCTTCCACTGTAACATCTGCAATGCAAATTCATTGGTGTTCTGCCATGAGATTCAAGATGCCTTTTGAAACTGAAGATTCGTCTCGGATAAGCTGGTTTATGGGTACTATATCTTCTGTCCAGGTAGCCGATCCCATTCGGTGGCCTAATTCTCCATGGCGACTTCTACAGGTGGCATGGGATGAGCCAGACTTGCTACAGAATGTGAAATGTGTTAACCCTTGGTTAGTTGAAGTGGTAGTAAATATGCCAGCTATCCATGTCTCCCCCTTCTCACCACCGAGAAAGAAGCCGCGTTTTCCACAGCAAGCAGACAGCACCGCTCTTTTTGGTCAACTTCCGATGCCATCATTTTCTACCAATTTCTTTGATCCAACCAACCCCTTACAAAGTATTGCAGGTATCATTCCAGCAGGCATACAGGGAGCCAGGCATGCACAATTTGGACTCTCTTCATCTGACCTCCAACTCAACAGACTGCAGTCAGGTCAATTTCCAGTCGGTTTTAAGCACCTCGATGGTGCCACGCCTCTTGCTGGAATCCACAGTGAAGGTTTCTTTGGAGGCATAAGAAACCCTAATGGCTTTTCTCACTGGCTAACAATGGGAAATCACATACAAAGCTCAAAAGAAAACAAAGAAACAAAACCACCTCATATCTTATTGTTTGGACAACTTATTCTGCCTGATCAACAGATTTCCAAGAGTTGCTCTGGTGATACTAATATATCAGATGCGAATATAGAGAAAGCAACAAATTTTTCAGATGGTTCCGGTTCATTGAAAAACTCATCAGAAGCAGATGGAGGATCTCCCTCTTACAACGGTCAGGATAACACTGGCCTTAGCTTGGACACTGGACACTGCAAGGTGTTTATGGAGTTGGAGAATGTAGGTCGTACTCTCGACCTGTCAGTCCTCGGATCATACGAAGAATTATACAGAAAGCTGGCCAATATGTTTGGTGTAGGAAGCTCAGAGATGTTGAGTTCTGTTCTTTATCAGGATGCACTTGGTGCTACAAAACATGCTGGAGATGAACCTTTCAGCGAGTTTCTGAAGACGGCAAGACGACTAACAGTACATGCAGATTCAAGTAGTGACAACATTAGAATGTAG 2046 44.67 MNRGMDSVLEPMRIPEKYLDSQLWHACAGGMVQLPPINSKVFYFPQGHAEHARGIVDFGNHRIPPFVLCRLSAVRYMADPETDEVFAKMRLIPLRNNDFEIEDADELLGHHDIRSQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTILAKDVHGGTWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAENGDLCVGVRRAKKGIGGGIDYSSGWNAPNANCGSPLMGYPEFMRDNECRLMRRNPKGNLNGKVKTESVLEAAILAASGKPFEVVYYPCAGTPEFCVKASTVTSAMQIHWCSAMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPNSPWRLLQVAWDEPDLLQNVKCVNPWLVEVVVNMPAIHVSPFSPPRKKPRFPQQADSTALFGQLPMPSFSTNFFDPTNPLQSIAGIIPAGIQGARHAQFGLSSSDLQLNRLQSGQFPVGFKHLDGATPLAGIHSEGFFGGIRNPNGFSHWLTMGNHIQSSKENKETKPPHILLFGQLILPDQQISKSCSGDTNISDANIEKATNFSDGSGSLKNSSEADGGSPSYNGQDNTGLSLDTGHCKVFMELENVGRTLDLSVLGSYEELYRKLANMFGVGSSEMLSSVLYQDALGATKHAGDEPFSEFLKTARRLTVHADSSSDNIRM 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2702701 2705369 + evm.model.ptg000021l.395 HCH13g0395 556900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0395 681 Pfam Auxin response factor 284 366 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH13g0395 681 FunFam Auxin response factor 321 394 - -
HCH13g0395 681 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677(InterPro)
HCH13g0395 681 ProSiteProfiles PB1 domain profile. 595 673 IPR053793 -
HCH13g0395 681 CDD B3_DNA 121 222 IPR003340 GO:0003677(InterPro)
HCH13g0395 681 Gene3D - 321 393 - -
HCH13g0395 681 SMART B3_2 122 224 IPR003340 GO:0003677(InterPro)
HCH13g0395 681 FunFam Auxin response factor 120 224 - -
HCH13g0395 681 SUPERFAMILY DNA-binding pseudobarrel domain 107 223 IPR015300 -
HCH13g0395 681 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677(InterPro)
HCH13g0395 681 MobiDBLite consensus disorder prediction 563 589 - -
HCH13g0395 681 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 675 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH13g0395 681 Gene3D - 120 224 IPR015300 -
HCH13g0395 681 Gene3D - 593 679 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0395 HCH-Chr13:2702701 HCH2g1183 HCH-Chr2:54337450 1.70E-230 dispersed
HCH13g0395 HCH-Chr13:2702701 HCH9g0585 HCH-Chr9:3937229 1.10E-237 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32794 PF02362 B3 2.70E-21 CL0405 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0395 K14486 - csv:101204568 1006.51