Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0401 ATGGCGAAGAATGTGGATGGCTCGTTTTCAGGGAAGGATTATCATGACCCACCACCGGCGCCGCTGATTGACGGAGCTGAGCTTGGGAAATGGTCGTTTTACAGAGCTTTGATCGCTGAGTTTATAGCGACGCTGCTTTTTCTTTATATCGGTGTTTTGACTGTGATTGGTTATAAAAGCCAGACTGATGCGAGTGTTAATAAGAATGCTGATCCTTGTGGTGGTGTTGGGATTCTTGGAATTTCTTGGGCTTTTGGTGGAATGATCTTTGTTCTTGTTTACTGTACTGCTGGCATTTCAGGGGGTCACATAAACCCGGCGGTGACATTCGGGCTATTTTTGGCCCGTAAGGTATCGCTGGTTCGGGCCGTGATGTACATGGTGGCCCAATCTTTGGGAGCCATTTGCGGAGTTGGGCTTGTAAAGGCTTTCCAGAAGGCCCATTTCCAAAAGTACGGAGGTGGGGCCAATGGGCTCCAAGATGGGTACTCCACAGGCGTTGGATTGGCTGCTGAGATCATCGGCACCTTTGTTTTGGTTTACACTGTGTTCTCAGCCACTGATCCCAAGAGGAGTGCACGAGATTCCCATGTTCCGGTTTTGGCTCCACTTCCAATTGGGTTTGCTGTTTTCATGGTTCATTTGGCCACCATCCCAATTACTGGCACTGGTATCAACCCAGCAAGGAGCTTGGGTTCTGCTGTTATTTTCAATGAGAAAAAGGCTTGGGATGACCAATGGATCTTCTGGGTTGGACCCTTTATTGGAGCAGCCATTGCAGCTTTCTACCACCAATTCATATTGAGAGCAGGTGCTGTGAAAGCTCTTGGGTCATTCAGAAGCAACCCCCATGTGTGA 858 48.6 MAKNVDGSFSGKDYHDPPPAPLIDGAELGKWSFYRALIAEFIATLLFLYIGVLTVIGYKSQTDASVNKNADPCGGVGILGISWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQSLGAICGVGLVKAFQKAHFQKYGGGANGLQDGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGSAVIFNEKKAWDDQWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPHV 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2747532 2750576 + evm.model.ptg000021l.401 HCH13g0401 556906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0401 285 ProSitePatterns MIP family signature. 103 111 IPR022357 -
HCH13g0401 285 PRINTS Major intrinsic protein family signature 171 189 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0401 285 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0401 285 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0401 285 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0401 285 PRINTS Major intrinsic protein family signature 207 229 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0401 285 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0401 285 Gene3D Glycerol uptake facilitator protein. 20 285 IPR023271 -
HCH13g0401 285 CDD MIP 35 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0401 285 Pfam Major intrinsic protein 28 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0401 285 SUPERFAMILY Aquaporin-like 29 269 IPR023271 -
HCH13g0401 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 281 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
HCH13g0401 285 FunFam Probable aquaporin PIP1-2 20 283 - -
HCH13g0401 285 NCBIfam MIP family channel protein 39 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0401 HCH-Chr13:2747532 HCH9g0590 HCH-Chr9:3974820 3.00E-133 dispersed
HCH1g0670 HCH-Chr1:55597239 HCH13g0401 HCH-Chr13:2747532 1.80E-138 wgd
HCH11g0278 HCH-Chr11:2515246 HCH13g0401 HCH-Chr13:2747532 3.30E-119 wgd
HCH13g0401 HCH-Chr13:2747532 HCH9g0588 HCH-Chr9:3961959 9.00E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0401 K09872 - mdm:103428693 510.76