Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH13g0401 | ATGGCGAAGAATGTGGATGGCTCGTTTTCAGGGAAGGATTATCATGACCCACCACCGGCGCCGCTGATTGACGGAGCTGAGCTTGGGAAATGGTCGTTTTACAGAGCTTTGATCGCTGAGTTTATAGCGACGCTGCTTTTTCTTTATATCGGTGTTTTGACTGTGATTGGTTATAAAAGCCAGACTGATGCGAGTGTTAATAAGAATGCTGATCCTTGTGGTGGTGTTGGGATTCTTGGAATTTCTTGGGCTTTTGGTGGAATGATCTTTGTTCTTGTTTACTGTACTGCTGGCATTTCAGGGGGTCACATAAACCCGGCGGTGACATTCGGGCTATTTTTGGCCCGTAAGGTATCGCTGGTTCGGGCCGTGATGTACATGGTGGCCCAATCTTTGGGAGCCATTTGCGGAGTTGGGCTTGTAAAGGCTTTCCAGAAGGCCCATTTCCAAAAGTACGGAGGTGGGGCCAATGGGCTCCAAGATGGGTACTCCACAGGCGTTGGATTGGCTGCTGAGATCATCGGCACCTTTGTTTTGGTTTACACTGTGTTCTCAGCCACTGATCCCAAGAGGAGTGCACGAGATTCCCATGTTCCGGTTTTGGCTCCACTTCCAATTGGGTTTGCTGTTTTCATGGTTCATTTGGCCACCATCCCAATTACTGGCACTGGTATCAACCCAGCAAGGAGCTTGGGTTCTGCTGTTATTTTCAATGAGAAAAAGGCTTGGGATGACCAATGGATCTTCTGGGTTGGACCCTTTATTGGAGCAGCCATTGCAGCTTTCTACCACCAATTCATATTGAGAGCAGGTGCTGTGAAAGCTCTTGGGTCATTCAGAAGCAACCCCCATGTGTGA | 858 | 48.6 | MAKNVDGSFSGKDYHDPPPAPLIDGAELGKWSFYRALIAEFIATLLFLYIGVLTVIGYKSQTDASVNKNADPCGGVGILGISWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQSLGAICGVGLVKAFQKAHFQKYGGGANGLQDGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGSAVIFNEKKAWDDQWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPHV | 285 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 2747532 | 2750576 | + | evm.model.ptg000021l.401 | HCH13g0401 | 556906 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH13g0401 | 285 | ProSitePatterns | MIP family signature. | 103 | 111 | IPR022357 | - | |
HCH13g0401 | 285 | PRINTS | Major intrinsic protein family signature | 171 | 189 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH13g0401 | 285 | PRINTS | Major intrinsic protein family signature | 35 | 54 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH13g0401 | 285 | PRINTS | Major intrinsic protein family signature | 122 | 141 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH13g0401 | 285 | PRINTS | Major intrinsic protein family signature | 247 | 267 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH13g0401 | 285 | PRINTS | Major intrinsic protein family signature | 207 | 229 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH13g0401 | 285 | PRINTS | Major intrinsic protein family signature | 85 | 109 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH13g0401 | 285 | Gene3D | Glycerol uptake facilitator protein. | 20 | 285 | IPR023271 | - | |
HCH13g0401 | 285 | CDD | MIP | 35 | 267 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH13g0401 | 285 | Pfam | Major intrinsic protein | 28 | 264 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH13g0401 | 285 | SUPERFAMILY | Aquaporin-like | 29 | 269 | IPR023271 | - | |
HCH13g0401 | 285 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 8 | 281 | IPR034294 | GO:0005886(PANTHER)|GO:0015250(PANTHER) | |
HCH13g0401 | 285 | FunFam | Probable aquaporin PIP1-2 | 20 | 283 | - | - | |
HCH13g0401 | 285 | NCBIfam | MIP family channel protein | 39 | 264 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g0401 | HCH-Chr13:2747532 | HCH9g0590 | HCH-Chr9:3974820 | 3.00E-133 | dispersed | |
HCH1g0670 | HCH-Chr1:55597239 | HCH13g0401 | HCH-Chr13:2747532 | 1.80E-138 | wgd | |
HCH11g0278 | HCH-Chr11:2515246 | HCH13g0401 | HCH-Chr13:2747532 | 3.30E-119 | wgd | |
HCH13g0401 | HCH-Chr13:2747532 | HCH9g0588 | HCH-Chr9:3961959 | 9.00E-130 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH13g0401 | K09872 | - | mdm:103428693 | 510.76 |