Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0405 ATGGCTTCTAACACCTTGATGAGCTGTGGAATTTCCACCACCGCCTTCCCCTCCGTCCTCTCCTCCTCCAAATCTAAATTCGCCTCCGCCCTCCCACTTTCCGGTGTCAGTGTCAATGCCTCCTCACGTTTCACCATGTCGGCCGAATGGATGCCGGGACAGCCCCGCCCTCCCTACCTCGACGGCTCAGCTCCCGGTGACTTTGGATTTGACCCTCTACGGCTAGGGGAAGTGCCTGAGAATCTTGAGAGGTTCAAGGAATCAGAATTGATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTGCCTGAGGCTTTGGGCCTTGGAAACTGGGTCAAAGCTCAAGAATGGGCTGCAGTTCCAGGAGGCCAAGCAACCTATTTGGGGCAGCCAGTTCCATGGGGTACTTTGCCTACAATCTTGGTCATTGAGTTTATTGCCATTGCCTTTGTAGAGCACCAAAGGAGCATTGAGAAAGACACCGAAAAGAAGAAGTACCCTGGTGGTGCTTTTGACCCTTTGGGCTACTCCAAGGACCCTGAAAAATTGAAGGAATACAAAGTCAAAGAGATAAAAAATGGTCGGCTGGCGTTGTTGGCTTTCGTGGGGTTCTGTGTGCAGCAATCAGCATATCCAGGAACAGGGCCATTGGAGAATTTGGCAACTCATTTGGCAGACCCATGGCACAACAACATTGGGGACATTATCATCCCAAGATCACTTTGA 735 51.16 MASNTLMSCGISTTAFPSVLSSSKSKFASALPLSGVSVNASSRFTMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFIAIAFVEHQRSIEKDTEKKKYPGGAFDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPRSL 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2794056 2795327 - evm.model.ptg000021l.405 HCH13g0405 556910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0405 244 Gene3D Chlorophyll a/b binding protein domain 51 237 - -
HCH13g0405 244 SUPERFAMILY Chlorophyll a-b binding protein 40 239 - -
HCH13g0405 244 Pfam Chlorophyll A-B binding protein 57 211 IPR022796 -
HCH13g0405 244 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 40 235 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
HCH13g0405 244 FunFam Chlorophyll a-b binding protein, chloroplastic 51 237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0096 HCH-Chr11:1192407 HCH13g0405 HCH-Chr13:2794056 4.80E-38 dispersed
HCH13g0405 HCH-Chr13:2794056 HCH3g0069 HCH-Chr3:401129 3.10E-38 dispersed
HCH13g0405 HCH-Chr13:2794056 HCH8g1293 HCH-Chr8:48037477 5.10E-41 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0405 K08907 - csv:101211428 473.396