Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0419 ATGGGGAAGAGGGGGAGCTGGTTTTCTGCTGTGAAGAAAGCTTTTAGTCCTGAACCAAAGGAAAAGAAAGATCAGAAAACTAGTAAATCAAAGAAAAGATGGTTTGGAAAACACAAGAGCTTGGATGTGAAATCATCTGCTGAGTCAGCTCCTTTGGATGTTTCTACTCCTTCCATTGAAGAGGTGAAGCTTACAGCAGCAGAAAATGAGCAGAGTAAGCATGCTTATTCTGTTGCCATTGCCACTGCTGTTGCTGCCGAGGCTGCCGTTGCAGCGGCTCAGGCTGCGGCAGAGGTTGTTCGACTCACTACCATTCCTCGTTACCCCGGGAAATCGAAGGAAGAAATAGCAGCCATCAAGATTCAGACTGCTTTTCGTGGTTATATGGCAAGGAGGGCCTTGAGGGCATTAAGAGGGTTGGTAAGGTTGAAGTCATTGATACAAGGGCAATCTGTTAAAAGACAAGCAACGAGCACATTGAGATGTATGCAAACGCTTGCTCGTGTACAATCACAGATTCGTGCCAGGAGGATTAGAATGTCTGAGGAGAATCAGGCTCTTCAAAGACAGCTTCTACAGAAACAGGAAAGAGAGTTGGAGAGATTGAGTTCTTCTGTGAATAATGAATGGGATGATAGAACAAAATCAAAGGAGGAAATTGATGCTAAATTAGTGTACAGGCAAGAAGCAGCAACAAGAAGAGAAAGGGCATTGGCATATGCTTTCTCTCATCAGAACTCGTGGAAGAATTCTTCAAAATCTGCAAACCCCACATTCATGGATCCAAATAATCCCCACTGGGGCTGGAGTTGGTTAGAGAGATGGATGGCAACTCGTCCGTGGGAGGCAAAAAGCACGGTCGACTACCATGATCGTGCCTCCTTGAAGAGTGTAGTTAGCCATGCGACGTCTATTGGAGACATTACAAAAGCATATGCCCGCCGTGATCTCAATCTTGACATCAAGCCTTTTCCAAGGACCCCTACGAGCCAAAAAACAAGTCGGCCTCCAAGTCGCCAGTCCCCATCAACTCCTACCAAGGCACAATCTTCATTATCTGCAGGGAGGAAACTGAAGCCAGCAAGTCCAAGAGGAAGTGGCTGGGGTGGGGATGAGGACTCAAGGAGTGGATTGAGCATCAAGTCAGAGCGCTTCCGGCGACACAGCATTGCGGGGTCATCGGTGAGGGATGATGAAAGCTTTGCCAGTTCGCCTTCCGTTCCAAGTTACATGGCATCCACAGAAGCAGCCAGGGCCAGGTCCCGGCTTTCCAGTCCATTAGGAATGGAAAAGAATGTGACCCCAGATAAGGGAACAGCAAGTGGTGCAAAGAAGCGGCTCTCATTCCCCACCTCTCCAGGCAAGGCGAGGAGGCACTCCGGTCCTCCAAAAATAGATGTCAGCCCCATCAAGGGCACTGGAGTGCATCTTCAAGAGAGACTTTATACTGATGAGAGCAGATAG 1464 48.16 MGKRGSWFSAVKKAFSPEPKEKKDQKTSKSKKRWFGKHKSLDVKSSAESAPLDVSTPSIEEVKLTAAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTIPRYPGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATSTLRCMQTLARVQSQIRARRIRMSEENQALQRQLLQKQERELERLSSSVNNEWDDRTKSKEEIDAKLVYRQEAATRRERALAYAFSHQNSWKNSSKSANPTFMDPNNPHWGWSWLERWMATRPWEAKSTVDYHDRASLKSVVSHATSIGDITKAYARRDLNLDIKPFPRTPTSQKTSRPPSRQSPSTPTKAQSSLSAGRKLKPASPRGSGWGGDEDSRSGLSIKSERFRRHSIAGSSVRDDESFASSPSVPSYMASTEAARARSRLSSPLGMEKNVTPDKGTASGAKKRLSFPTSPGKARRHSGPPKIDVSPIKGTGVHLQERLYTDESR 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2901832 2904220 + evm.model.ptg000021l.419 HCH13g0419 556924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0419 487 MobiDBLite consensus disorder prediction 376 394 - -
HCH13g0419 487 Gene3D - 71 141 - -
HCH13g0419 487 MobiDBLite consensus disorder prediction 319 473 - -
HCH13g0419 487 MobiDBLite consensus disorder prediction 1 49 - -
HCH13g0419 487 SMART iq_5 113 135 IPR000048 GO:0005515(InterPro)
HCH13g0419 487 MobiDBLite consensus disorder prediction 396 411 - -
HCH13g0419 487 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515(InterPro)
HCH13g0419 487 ProSiteProfiles IQ motif profile. 114 142 - -
HCH13g0419 487 Coils Coil 177 209 - -
HCH13g0419 487 MobiDBLite consensus disorder prediction 324 356 - -
HCH13g0419 487 PANTHER IQ-DOMAIN 5-RELATED 6 436 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0419 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1165 HCH-Chr10:41650275 HCH13g0419 HCH-Chr13:2901832 1.90E-28 dispersed
HCH11g1322 HCH-Chr11:45206943 HCH13g0419 HCH-Chr13:2901832 5.50E-28 dispersed
HCH12g0495 HCH-Chr12:2906074 HCH13g0419 HCH-Chr13:2901832 3.30E-30 dispersed
HCH13g0419 HCH-Chr13:2901832 HCH8g0320 HCH-Chr8:25360599 6.70E-32 dispersed
HCH13g1014 HCH-Chr13:27171300 HCH13g0419 HCH-Chr13:2901832 7.20E-42 transposed
HCH7g0295 HCH-Chr7:2083961 HCH13g0419 HCH-Chr13:2901832 2.50E-12 transposed
HCH7g1783 HCH-Chr7:49381077 HCH13g0419 HCH-Chr13:2901832 2.10E-36 transposed
HCH1g0657 HCH-Chr1:55483785 HCH13g0419 HCH-Chr13:2901832 1.30E-120 wgd
HCH11g0260 HCH-Chr11:2400309 HCH13g0419 HCH-Chr13:2901832 1.50E-78 wgd
HCH13g0419 HCH-Chr13:2901832 HCH9g0605 HCH-Chr9:4048401 5.10E-117 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0657 . 101 278 IQD Protein Family AT3G09710 55.8 2.3e-50 196.8
HCH13g0419 . 1 471 IQD Protein Family AT3G52290 55.7 3.1e-105 379.0
HCH8g0320 . 1 410 IQD Protein Family AT3G22190 55.8 2.5e-91 332.8
HCH12g0495 . 1 440 IQD Protein Family AT2G26180 58.8 4.0e-118 421.8
HCH14g0967 . 1 279 IQD Protein Family AT2G33990 50.5 2.8e-61 232.3
HCH6g0649 . 44 222 IQD Protein Family AT2G33990 53.9 2.1e-48 189.5
HCH6g0649 . 47 257 IQD Protein Family AT3G15050 56.3 1.3e-58 223.4
HCH10g0074 . 1 546 IQD Protein Family AT3G59690 52.3 2.3e-107 386.3
HCH13g1014 . 1 495 IQD Protein Family AT4G00820 54.5 4.5e-122 435.3
HCH7g1783 . 1 512 IQD Protein Family AT4G00820 53.0 1.0e-121 434.1
HCH7g1783 . 1 512 IQD Protein Family AT1G01110 51.8 8.3e-121 431.0
HCH13g1014 . 1 495 IQD Protein Family AT1G01110 52.4 1.4e-120 430.3
HCH4g1441 . 1 385 IQD Protein Family AT3G16490 54.5 1.4e-77 287.0
HCH5g1306 . 1 380 IQD Protein Family AT3G16490 53.2 1.2e-71 267.3
HCH8g0696 . 1 397 IQD Protein Family AT3G16490 52.1 3.2e-69 259.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40