Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0419 ATGGGGAAGAGGGGGAGCTGGTTTTCTGCTGTGAAGAAAGCTTTTAGTCCTGAACCAAAGGAAAAGAAAGATCAGAAAACTAGTAAATCAAAGAAAAGATGGTTTGGAAAACACAAGAGCTTGGATGTGAAATCATCTGCTGAGTCAGCTCCTTTGGATGTTTCTACTCCTTCCATTGAAGAGGTGAAGCTTACAGCAGCAGAAAATGAGCAGAGTAAGCATGCTTATTCTGTTGCCATTGCCACTGCTGTTGCTGCCGAGGCTGCCGTTGCAGCGGCTCAGGCTGCGGCAGAGGTTGTTCGACTCACTACCATTCCTCGTTACCCCGGGAAATCGAAGGAAGAAATAGCAGCCATCAAGATTCAGACTGCTTTTCGTGGTTATATGGCAAGGAGGGCCTTGAGGGCATTAAGAGGGTTGGTAAGGTTGAAGTCATTGATACAAGGGCAATCTGTTAAAAGACAAGCAACGAGCACATTGAGATGTATGCAAACGCTTGCTCGTGTACAATCACAGATTCGTGCCAGGAGGATTAGAATGTCTGAGGAGAATCAGGCTCTTCAAAGACAGCTTCTACAGAAACAGGAAAGAGAGTTGGAGAGATTGAGTTCTTCTGTGAATAATGAATGGGATGATAGAACAAAATCAAAGGAGGAAATTGATGCTAAATTAGTGTACAGGCAAGAAGCAGCAACAAGAAGAGAAAGGGCATTGGCATATGCTTTCTCTCATCAGAACTCGTGGAAGAATTCTTCAAAATCTGCAAACCCCACATTCATGGATCCAAATAATCCCCACTGGGGCTGGAGTTGGTTAGAGAGATGGATGGCAACTCGTCCGTGGGAGGCAAAAAGCACGGTCGACTACCATGATCGTGCCTCCTTGAAGAGTGTAGTTAGCCATGCGACGTCTATTGGAGACATTACAAAAGCATATGCCCGCCGTGATCTCAATCTTGACATCAAGCCTTTTCCAAGGACCCCTACGAGCCAAAAAACAAGTCGGCCTCCAAGTCGCCAGTCCCCATCAACTCCTACCAAGGCACAATCTTCATTATCTGCAGGGAGGAAACTGAAGCCAGCAAGTCCAAGAGGAAGTGGCTGGGGTGGGGATGAGGACTCAAGGAGTGGATTGAGCATCAAGTCAGAGCGCTTCCGGCGACACAGCATTGCGGGGTCATCGGTGAGGGATGATGAAAGCTTTGCCAGTTCGCCTTCCGTTCCAAGTTACATGGCATCCACAGAAGCAGCCAGGGCCAGGTCCCGGCTTTCCAGTCCATTAGGAATGGAAAAGAATGTGACCCCAGATAAGGGAACAGCAAGTGGTGCAAAGAAGCGGCTCTCATTCCCCACCTCTCCAGGCAAGGCGAGGAGGCACTCCGGTCCTCCAAAAATAGATGTCAGCCCCATCAAGGGCACTGGAGTGCATCTTCAAGAGAGACTTTATACTGATGAGAGCAGATAG 1464 48.16 MGKRGSWFSAVKKAFSPEPKEKKDQKTSKSKKRWFGKHKSLDVKSSAESAPLDVSTPSIEEVKLTAAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTIPRYPGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATSTLRCMQTLARVQSQIRARRIRMSEENQALQRQLLQKQERELERLSSSVNNEWDDRTKSKEEIDAKLVYRQEAATRRERALAYAFSHQNSWKNSSKSANPTFMDPNNPHWGWSWLERWMATRPWEAKSTVDYHDRASLKSVVSHATSIGDITKAYARRDLNLDIKPFPRTPTSQKTSRPPSRQSPSTPTKAQSSLSAGRKLKPASPRGSGWGGDEDSRSGLSIKSERFRRHSIAGSSVRDDESFASSPSVPSYMASTEAARARSRLSSPLGMEKNVTPDKGTASGAKKRLSFPTSPGKARRHSGPPKIDVSPIKGTGVHLQERLYTDESR 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2901832 2904220 + evm.model.ptg000021l.419 HCH13g0419 556924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0419 487 MobiDBLite consensus disorder prediction 376 394 - -
HCH13g0419 487 Gene3D - 71 141 - -
HCH13g0419 487 MobiDBLite consensus disorder prediction 319 473 - -
HCH13g0419 487 MobiDBLite consensus disorder prediction 1 49 - -
HCH13g0419 487 SMART iq_5 113 135 IPR000048 GO:0005515(InterPro)
HCH13g0419 487 MobiDBLite consensus disorder prediction 396 411 - -
HCH13g0419 487 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515(InterPro)
HCH13g0419 487 ProSiteProfiles IQ motif profile. 114 142 - -
HCH13g0419 487 Coils Coil 177 209 - -
HCH13g0419 487 MobiDBLite consensus disorder prediction 324 356 - -
HCH13g0419 487 PANTHER IQ-DOMAIN 5-RELATED 6 436 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1165 HCH-Chr10:41650275 HCH13g0419 HCH-Chr13:2901832 1.90E-28 dispersed
HCH11g1322 HCH-Chr11:45206943 HCH13g0419 HCH-Chr13:2901832 5.50E-28 dispersed
HCH12g0495 HCH-Chr12:2906074 HCH13g0419 HCH-Chr13:2901832 3.30E-30 dispersed
HCH13g0419 HCH-Chr13:2901832 HCH8g0320 HCH-Chr8:25360599 6.70E-32 dispersed
HCH13g1014 HCH-Chr13:27171300 HCH13g0419 HCH-Chr13:2901832 7.20E-42 transposed
HCH7g0295 HCH-Chr7:2083961 HCH13g0419 HCH-Chr13:2901832 2.50E-12 transposed
HCH7g1783 HCH-Chr7:49381077 HCH13g0419 HCH-Chr13:2901832 2.10E-36 transposed
HCH1g0657 HCH-Chr1:55483785 HCH13g0419 HCH-Chr13:2901832 1.30E-120 wgd
HCH11g0260 HCH-Chr11:2400309 HCH13g0419 HCH-Chr13:2901832 1.50E-78 wgd
HCH13g0419 HCH-Chr13:2901832 HCH9g0605 HCH-Chr9:4048401 5.10E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0419 - - - 0.0