Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0420 ATGCAGCAAAATATCGATGAAATCATGCAATGGTACGCGCCGCCGCCACCGCCCCCGATCCATATCCCAGCTACCGTCTCGCAGCTCCCTCCCGTCTCATCTTCTCATTCTCCTCCGCCTCAATCTAAGTCTCCCACCACCGTTTCTCCAGTAATTGTCAGCCCATGCGCCGCCTGCAAGATCCTCCGCCGCAGATGCGTCGAAAAATGCGTCTTAGCTCCATATTTCCCTCCATCCGAGCCACTCAAATTCGCTATCGCTCATAGAATCTTCGGAGCAAGTAACATCATCAAGTTCTTACAGGAACTTTCGGAGGATCAAAGAGCAGATGCCGTGAGCAGTTTAGTCTACGAGGCCAATGCGAGGATCCGCGACCCCGTCTATGGCTGCGCCGGCGTGATTTTCCAGCTTCAGAATCAATTGAGCGAGCTCCATGCAGAATTAGCCATGGCGAAGGCGGAGCTCGACAACATTTCTCTTCAACAAGCAAATCTCGTAACCCTAATTTGCATGGAAATGAAAGAGTTTCAGTTTCAAGTTCAACAAGACAACTATATCAGAGAAACATTACCGCCGCCGCATTATTATTGA 591 50.08 MQQNIDEIMQWYAPPPPPPIHIPATVSQLPPVSSSHSPPPQSKSPTTVSPVIVSPCAACKILRRRCVEKCVLAPYFPPSEPLKFAIAHRIFGASNIIKFLQELSEDQRADAVSSLVYEANARIRDPVYGCAGVIFQLQNQLSELHAELAMAKAELDNISLQQANLVTLICMEMKEFQFQVQQDNYIRETLPPPHYY 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2909082 2909906 + evm.model.ptg000021l.420 HCH13g0420 556925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0420 196 Coils Coil 134 161 - -
HCH13g0420 196 MobiDBLite consensus disorder prediction 23 48 - -
HCH13g0420 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 54 164 - -
HCH13g0420 196 Pfam Lateral organ boundaries (LOB) domain 55 152 IPR004883 -
HCH13g0420 196 ProSiteProfiles LOB domain profile. 54 155 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0420 HCH-Chr13:2909082 HCH3g1271 HCH-Chr3:48172352 9.20E-49 dispersed
HCH1g0528 HCH-Chr1:54215123 HCH13g0420 HCH-Chr13:2909082 2.70E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32796 PF03195 LOB 3.80E-41 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0420 - - - 0.0