Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0445 ATGGAGATAACCTACGCCTCACCTAGCGCAACTGGTCTTTCTTCTTCTTCCTCCATGCCTGCCTTAAACCGGCCGGTAAAGGTAATTCCTTTACAGCATCCTCATACGACGTCTTCTTCAGCTGCCGGAGTTTCTTACGCCACCGATGCGTTGAAGACATGGACGTCGAAAGTTAAACGGATGACGTGGATTGAATGGATGGAGGTTTTATTGCCTTGTTCTCGTTGGATTAGAACGTATAAATGGCGCGAATATTTTCAGATCGATCTCTTGGCCGGTATTACGATTGGTATCATGCTCGTTCCGCAGGCAATGTCTTACGCAAAATTAGCTGGGCTTCGACCGATATATGGACTTTATTCTGGTTTTTTCCCTCTGTTCGTTTATGCATTTTTCGGCTCTTCTCGTCAGCTCGCGGTTGGTCCGGTAGCATTAGTTTCTCTCCTGGTTTCTAATGTATTGGGTGGAATTGTCGATTCATCTGAGGAATTATACACCGAGCTTGCGATATTATTAGCACTCATGGTTGGAATAATGGAATGTGTGATGGGGCTCTTGAGGCTTGGATGGCTTATTCGCTTTATCAGTCACTCTGTAATTTCTGGCTTTACTACAGCTTCTGCCATTGTGATTGGATTATCTCAAGTGAAATACTTTCTGGGGTATGACATTTCGAGAAGTAGCAAAATCGTGCCACTAGTTGAGAGCATTATAGCTGGAGCAGATGGGTTCTTGTGGCCACCTTTCATAATGGGATCGACAATCCTTGCAATACTTCAGATAATGAAGCATATGGGAAAAACAAGGAAGCACTTGCGGTTCCTCAGAGTTACAGGTCCCCTCACAGCAGTTGTTATGGGTACAACTCTGGTGAAAGTATTCCGTTTTTCTTCCATTTCTCTGGTTGGACACATACCTCAGGGCCTTCCAAAGTTCTCTGTTCCTAGAAGTTTTGAGCATGTGATGTCTTTGATCCCAACATCACTTCTAATCACTGGAGTAGCTATATTGGAATCCGTGGGGATTGCCAAAGCATTAGCAGCAAAGAATGGGTATGAATTGGATTCAAATCAGGAGTTATTTGGTCTAGGAGTTGCCAACGTCGTCGGCTCATTTTTTTCAGCATATCCCACAACAGGTTCCTTCTCAAGATCAGCTGTGAACCATGAAAGTGGAGCAAAAACTGGCTTATCTGGGATTATCACGGGAATTGTTATGGGCGCTGCCCTTCTTTTCTTGACTCCAATGTTTGAGTACATACCTCAGTGTGCTCTGGCTGCCATTGTGATATCTGCTGTTATAACTCTGGTGGATTACAACGAGGCTATATTTTTGTGGCATATAAATAAGAAAGATTTTCTTCTTTGGGTGATTACTGCCATTGCTACATTGTTTCTTGGCATTGAGATTGGTGTCTTACTTGGGGTGGGTGTTTCACTTGTCTTTGTCATCCACGAATCTGCAAATCCGCATGTGGCTGTTTTGGGGCGTCTTCCTGGCACCACCATATACAGAAATATCCGGCAGTATCCTGAGGCATATACTTACAATGGAATTGTGATTGTTCGGATTGATGCACCAATTTATTTTGCAAACACGAGTTACATCAAAGACAGGTTACGTGATTATGAAGTCGAAGTCGACCGCTGTACTGGTCGTGGACCAGATGTTGAAAGAGTTTACTTCGTGATTATAGAGATGGCACCTGTCACTTATATAGATTCTAGTGCTGTCCAGGCTTTGAAGGACTTGTATCAGGAATACAAACTTCGTGATATTCAGATTGCCATTTCCAATCCGAATCGAGAAGTTCTGATGACCTTGACAAGGTCTGGTGTTATTGAGCTGATTGGTAAAGAGTGGTTCTTTGTGAGAGTTCATGATGCAGTTCAAGTTTGCCTTCAGCATGTTGAGAGATTAAAGGAAACAAGTAAGAGTTCAAATTCTTCATCAAAAGATGCATCAAGTTTCTACCAGAGGTTAATGAAATACAGAACTGAGGATTTGTCAGTCAGTGAGTTAGAATCCGGCAACCGAAAGCTTCCAAGCTCCAACGAAATCGACCCGCAACTGGAACCACTGCTGTCTCAGAAGCCTTGA 2100 43.29 MEITYASPSATGLSSSSSMPALNRPVKVIPLQHPHTTSSSAAGVSYATDALKTWTSKVKRMTWIEWMEVLLPCSRWIRTYKWREYFQIDLLAGITIGIMLVPQAMSYAKLAGLRPIYGLYSGFFPLFVYAFFGSSRQLAVGPVALVSLLVSNVLGGIVDSSEELYTELAILLALMVGIMECVMGLLRLGWLIRFISHSVISGFTTASAIVIGLSQVKYFLGYDISRSSKIVPLVESIIAGADGFLWPPFIMGSTILAILQIMKHMGKTRKHLRFLRVTGPLTAVVMGTTLVKVFRFSSISLVGHIPQGLPKFSVPRSFEHVMSLIPTSLLITGVAILESVGIAKALAAKNGYELDSNQELFGLGVANVVGSFFSAYPTTGSFSRSAVNHESGAKTGLSGIITGIVMGAALLFLTPMFEYIPQCALAAIVISAVITLVDYNEAIFLWHINKKDFLLWVITAIATLFLGIEIGVLLGVGVSLVFVIHESANPHVAVLGRLPGTTIYRNIRQYPEAYTYNGIVIVRIDAPIYFANTSYIKDRLRDYEVEVDRCTGRGPDVERVYFVIIEMAPVTYIDSSAVQALKDLYQEYKLRDIQIAISNPNREVLMTLTRSGVIELIGKEWFFVRVHDAVQVCLQHVERLKETSKSSNSSSKDASSFYQRLMKYRTEDLSVSELESGNRKLPSSNEIDPQLEPLLSQKP 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3082178 3090406 - evm.model.ptg000021l.445 HCH13g0445 556950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0445 699 ProSiteProfiles STAS domain profile. 509 633 IPR002645 -
HCH13g0445 699 SUPERFAMILY SpoIIaa-like 511 633 IPR036513 -
HCH13g0445 699 FunFam Sulfate transporter 31 489 636 - -
HCH13g0445 699 NCBIfam sulfate permease 72 629 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0445 699 CDD STAS_SulP_like_sulfate_transporter 510 626 - -
HCH13g0445 699 Pfam STAS domain 510 629 IPR002645 -
HCH13g0445 699 PANTHER SULFATE TRANSPORTER 58 635 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0445 699 Gene3D STAS domain 489 637 IPR036513 -
HCH13g0445 699 MobiDBLite consensus disorder prediction 674 699 - -
HCH13g0445 699 ProSitePatterns SLC26A transporters signature. 115 136 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
HCH13g0445 699 MobiDBLite consensus disorder prediction 676 699 - -
HCH13g0445 699 Pfam Sulfate permease family 86 459 IPR011547 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0445 HCH-Chr13:3082178 HCH4g1677 HCH-Chr4:18000567 5.90E-106 dispersed
HCH13g0445 HCH-Chr13:3082178 HCH12g0771 HCH-Chr12:4957419 6.70E-110 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0445 K18059 - csv:101202870 1146.34