Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0450 ATGCCAATTCACAAAATTTCTCTCGGAACGCCGGGAGAGGCTAGCCACCCCGATGCCATAAAGGCGGCGTTTGCCGAGTTCTTTTCGATGATCATATTCGTCTTCGCCGGAGAAGGATCCGGCATGGCTTTCAATAAGCTAACGGAAAACGCCCCGGGGACGCCATCGGGGCTGGTTGCTGCATCATTAGCTCATGCTTTTGCATTGATTGTGGCGGTTTCGGTCGGAGCCAATATCTCCGGCGGGCATGTCAATCCGGCAGTGACTTTTGGTGCACTCATGGGTGGAAACATATCATTTCTTAGAAGCATTTTGTACTGGATTGCTCAATTGCTTGGCTCTGTTGTTGCCTGCTTTCTTCTCAAGTTTGCAACTGGTGGACTGGCAACACCAGCATTTGCCTTATCATCAGGAGTTTCTGTGTGGAATGCATTTATATTTGAGGCAGTGATGACTTTTGGATTAGTCTATACAGTGTATGCCACAGCAATAGATCCCAAGAGGGGGAATGTGGGCTTAATTGCACCAATTGCCATTGGTCTCATTGTGGGTGCTAACATTTTGGTGGGTGGTGCCTTTGATGGTGCATCCATGAACCCTGCAGTCTCCTTTGGCCCTGCTGTAGTCAGCTGGTCATGGACTCACCATTGGGTCTACTGGCTCGGTCCAATGGTCGGTGCCGCCATTGCAGCGATTGTATACGACACCATCTTCATCGGTGACGGCGTGCACGAGCCTCTTACGCAGTACAATGACTTTTAG 762 50.0 MPIHKISLGTPGEASHPDAIKAAFAEFFSMIIFVFAGEGSGMAFNKLTENAPGTPSGLVAASLAHAFALIVAVSVGANISGGHVNPAVTFGALMGGNISFLRSILYWIAQLLGSVVACFLLKFATGGLATPAFALSSGVSVWNAFIFEAVMTFGLVYTVYATAIDPKRGNVGLIAPIAIGLIVGANILVGGAFDGASMNPAVSFGPAVVSWSWTHHWVYWLGPMVGAAIAAIVYDTIFIGDGVHEPLTQYNDF 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3130903 3133389 + evm.model.ptg000021l.450 HCH13g0450 556955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0450 253 FunFam Probable aquaporin TIP1-1 4 252 - -
HCH13g0450 253 PANTHER AQUAPORIN-8 5 242 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
HCH13g0450 253 ProSitePatterns MIP family signature. 83 91 IPR022357 -
HCH13g0450 253 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0450 253 CDD MIP 21 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0450 253 SUPERFAMILY Aquaporin-like 15 240 IPR023271 -
HCH13g0450 253 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0450 253 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0450 253 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0450 253 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0450 253 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0450 253 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0450 253 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0450 HCH-Chr13:3130903 HCH3g1317 HCH-Chr3:50693490 1.10E-102 dispersed
HCH13g0450 HCH-Chr13:3130903 HCH11g0315 HCH-Chr11:2874028 1.40E-94 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0450 K09873 - csv:101222909 432.565