Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0453 ATGATGGAGCAATCTTCTTTCAGCAGTTTGAATAATGCAAAGCCATATTTTGCTGTGATTATACAGCAGTTCATCACAGCAGGAATGGTCATTATTTCAAAGTTGGCTTTGAATCAAGGAATGAACCAACATGTTTTGGTTGTTTATCGTTATTTTATAGCTACAATGGTTGTTGCTCCTTTTGCTTTTGTCTTTGAAAGGAAAATAAGACCAAAGATGACTTTCTCTATCTTTGTCAAGATTGTATTACTTGGCCTATTGGAGCCAGCAATTGATCAGAATCTATACTACACTGGCATGAAGTACACAACAGCAACTTTTGCATCTGCAATGACTAATATGGCTCCTGCCTTTGTGTTCTTAATGGCTTGGATGGTCAGGCTGGAGAGGGTTAATATTAAGCAATGGCAAAGCCAGGCAAAGATATTAGGGACAATAGTGACAGTGGGAGGAGCAATGGCAATGACTTTGTTAAGAGGGCCTGTTTTGAATCTGCCATGGACAAAACAAGACATCCATCATCCTTCTTCAATTGCAGCAAACCAGCAAGATCCTCTTAAGGGTGCTATGATGATCACATTGGGGTGTGTTTGTTGGGCCGCTTTTAACGTTCTTCAGGCAATTACATTGAAATCATACCCAGCAGGACTCTCATTAACAGCTTTGATATGCTTCTCTGGCACTGTGCAAGGCACAGTGATAGCTTTAGCCATGGAAGGCCATAATCCTGCTGCCTGGTCATTACATCTAGACTCCACCCTCTTAGCTCCCCTATACAGTGGAATCATGTCTTCAGGAGTTTCATATTCTATTCAAGCAGCAGTAATGCAGAAGAAAGGACCAGTTTTTGCAAGTACATTCAATCCTCTAAGCATGGTTATTGTTGCAATCATCAGTTCTTTCATATTATCTGAGATACTCTATTTAGGAAGGATAATTGGAGCAGCTATAATTATTACAGGTCTTTATTTGGTTTTGTGGGGTAAGAGCAAGGATCAGCATTCATTAAATGCAGCTAATGAGAAGCTAGCACCATCAGATCAGAAAATGACTGCAATAAATGACATGACAAAGACTTCAGATAAAGAAATTGGAATATCTAGAATAAGAACAGCAGATGATTCTGTTTGA 1131 39.35 MMEQSSFSSLNNAKPYFAVIIQQFITAGMVIISKLALNQGMNQHVLVVYRYFIATMVVAPFAFVFERKIRPKMTFSIFVKIVLLGLLEPAIDQNLYYTGMKYTTATFASAMTNMAPAFVFLMAWMVRLERVNIKQWQSQAKILGTIVTVGGAMAMTLLRGPVLNLPWTKQDIHHPSSIAANQQDPLKGAMMITLGCVCWAAFNVLQAITLKSYPAGLSLTALICFSGTVQGTVIALAMEGHNPAAWSLHLDSTLLAPLYSGIMSSGVSYSIQAAVMQKKGPVFASTFNPLSMVIVAIISSFILSEILYLGRIIGAAIIITGLYLVLWGKSKDQHSLNAANEKLAPSDQKMTAINDMTKTSDKEIGISRIRTADDSV 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3142416 3144420 - evm.model.ptg000021l.453 HCH13g0453 556958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0453 376 PANTHER WAT1-RELATED PROTEIN 18 341 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
HCH13g0453 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 148 - -
HCH13g0453 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 331 - -
HCH13g0453 376 Pfam EamA-like transporter family 16 144 IPR000620 GO:0016020(InterPro)
HCH13g0453 376 Pfam EamA-like transporter family 187 326 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0453 HCH-Chr13:3142416 HCH1g0469 HCH-Chr1:53289190 7.70E-129 dispersed
HCH13g0453 HCH-Chr13:3142416 HCH13g0454 HCH-Chr13:3157434 3.40E-116 tandem
HCH1g0468 HCH-Chr1:53260165 HCH13g0453 HCH-Chr13:3142416 8.70E-40 wgd
HCH13g0453 HCH-Chr13:3142416 HCH9g0645 HCH-Chr9:4288877 4.00E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0453 - - - 0.0