Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0454 ATGGAGAAATTATCTAGAAGTTATAACGAGGCAAAGCCATATTTGGGAGTGGTTGCATTAAGATTTGCTTCAGCAGGAATGTCAATTATTTCAAAAGCTGCTCTAAATCAAGGAATGAACCAACTTGTTACTGTTGTTTATCGTTATTCCATTGGCACCATTGTTGTTGCTCCTTTTGCCTTTGTCTTAGATAGGAAAATAAGACCAAAGATGACTTTCCCAATCTTTGCTAGAATTCTATTGCTGGGCTTACTAGAGCCAGTAATAGCCCAGAACTTGATTTATTCTGGTACAAAGTACACAACTGCAACTTTTGCAACTGCCATGTGCAATATTCTTCCTGCCTTTGCCTTTTTAATGGCTTGGATTTGCAGGATGGAGATAATCAATATTAGAAGCTTAAGAAGCCAAGCAAAGATTCTTGGAACATTGGTGACAGTAGGAGGAGCAATGATGATGACTCTTTTAAAAGGACCGGTTTTAAGTCTTCCATGGGCAAAGGAAAACTTCAGTTCCAATATTCATTCTTCAGTTCTTGCAAATAAGCAAGAAACTGTAAAGGGTGCCATTGTTATCACAATTTCTAGTATTTGCTCCTCTGCTTTCACCATTCTTCTGGCGTTTACCATAAGATTATACCCTGCGGAGCTGACTCTTACAACTTTGATATGCTTGGCGGGAGCTATAGAAGGAACTATCCTTGCTTTGGCAATGGAATGGAATAACCCTGCTGCCTGGGCTTTGCATGCAGATTCCATACTCTTAGCTGCCCTCTACGGTGGAATAATATCTTCTGGAGTTACCTATTATATTCAAGGAGTGGTGGTGAAGGAAAAGGGACCGGTATTTGTAACTGCATTCAATCCTCTCAGTATGGTTATTGTTGCTGTGATAAGTTCATTCATATTCTCCGAGACACAACGCTTGGGAAAGGTTTTTGGAGCAATTGTAATAATGGTAGGTCTTTATTTGGTTTTGTGGGGTAAGAGTAAAGATCAGCATCCACTCAAATTACCAACTTCAGAGCAGAAACCAATTGCAACAGATCATGAGGAGATCAAGACTACTACTAATTCAGATCAAGAACTTAAACTTGTAACCAATAATGGTGCTGCCTCAAGAACAATCACTGAATCTGTTTGA 1143 39.28 MEKLSRSYNEAKPYLGVVALRFASAGMSIISKAALNQGMNQLVTVVYRYSIGTIVVAPFAFVLDRKIRPKMTFPIFARILLLGLLEPVIAQNLIYSGTKYTTATFATAMCNILPAFAFLMAWICRMEIINIRSLRSQAKILGTLVTVGGAMMMTLLKGPVLSLPWAKENFSSNIHSSVLANKQETVKGAIVITISSICSSAFTILLAFTIRLYPAELTLTTLICLAGAIEGTILALAMEWNNPAAWALHADSILLAALYGGIISSGVTYYIQGVVVKEKGPVFVTAFNPLSMVIVAVISSFIFSETQRLGKVFGAIVIMVGLYLVLWGKSKDQHPLKLPTSEQKPIATDHEEIKTTTNSDQELKLVTNNGAASRTITESV 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3157434 3159935 - evm.model.ptg000021l.454 HCH13g0454 556959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0454 380 PANTHER WAT1-RELATED PROTEIN 17 344 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
HCH13g0454 380 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 156 - -
HCH13g0454 380 Pfam EamA-like transporter family 187 326 IPR000620 GO:0016020(InterPro)
HCH13g0454 380 Pfam EamA-like transporter family 14 153 IPR000620 GO:0016020(InterPro)
HCH13g0454 380 SUPERFAMILY Multidrug resistance efflux transporter EmrE 231 331 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0454 HCH-Chr13:3157434 HCH1g0469 HCH-Chr1:53289190 6.60E-112 dispersed
HCH13g0453 HCH-Chr13:3142416 HCH13g0454 HCH-Chr13:3157434 3.40E-116 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0454 - - - 0.0