Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0466 ATGGAAAATCCCGACGATCTCAGGCCAAATTCGAACTGCTTCAAACCTTCCATTACTAGTCTAGAAGAAGCCGAACAATCTTCCTCAGATAACGAAACCGAAGATGCACATCTTGTTTGTTGTTCTACCACGTCTGCTTCGGTTGCGACACCGATATCTCCCGGTCTTCCTCTGCTGAATAAATGTAATGTAGGGATTCAGGCTGATATGGATGATAAATTGGAGACAGTACAAAATATATGTCAGAAAATTGTGGACACTACAAACTTGTACTCATTTTCTAAATTGGATGACCAGCAAGTGTATTCTCTTATGAGGCTGAGGGAAATTTCTCACCGTGTTATTAATGATCGAGATTCAAGGGTAACAAAAAATGATGTGATTAGTGCTATGTGCTTTTACATCAACAGGCTGGCAGGTAAATGCAAGGACATTGTTGACATTTTAAACAGAATGTCAAATAAAGACTTGGATGACCAACGGGTGCAACAATTTTTGAGATTGAAAGAGCTTCTTTGTGGGATTGTTGATGGAGCTAAAGATGTGGAAACTGAACCTTCCCATATTGCTGAACATGGTGTTGCAAGTGATATGTGGATGACAGAGAGTTTGGAGGTTGAGCCATTTGACTCAAGCAATGGTGATGTACTGCTGGGAGAGGCTCAATTTATAGTGGTTGAAGATGAACATGAAGAGATCGGAGCAAGGCTCCAGAATCAATATTGTCACCTATCACATATTAATCCCTCGGTTACTTGGCCACCAAATGGAAGCTTAACCTTAGAGTGGGTTGTAGAGATGATGCAAACTCTTGATAAGTCTTCCAAAAACTATTCACCTGCAGAGTTTCAATTTGTCATGCCAGTTACCGTGGTAGATGCAATACTTGATGTAGCTGCAAGTATCCTTCACAAGGAACCAAACTGTGTGGAAATTGACTGCCATGGGGAAGTTTCAAAAGTTGTGATAGTTGGTGATATTCATGGACAGTATCATGATTTACTTCATCTCTTTGCACTTGCCAACTTCCCATCTGAAAACCAATATTATGTTTTTAATGGTAATTATGTGGACAGAGGAGCGTGGGGATTGGAGGTATTCCTGGTCTTGTCAGCTTGGAAGGTCTTGATGCCTGATAGAGTATATCTACTCCGTGGAAATCATGAAACCAGAATTTGCACATCATCCTATGGTTTTGAGAAAGAAGTAAGGACGAAATATGGTGAGCAAGGTGAAAAAGTATATAACAGGTGCTTGGAAACATTTAAGGAACTTCCTTTGGCTGCAATTATAGCTGGAAAAGTCTATACAACTCATGGAGGGTTATTTCGTAAGCCATGCAATTCCAATTCTTATGTGCAGAATGGCAAGGAAAGGAATACACATGAGCTAGAAATTGGATCCTTGGAGGACTTATCTAAGATTGAAAGGTTTTTTATTGACATTCCAAATAAAGATGAAGATCCAAATATGATTTTGGCAGATGTGTTGTGGTCGGATCCTACTAAAGTAGATGGTTTAAGGAGAAACAAAGACCGAGGAGCAGGTTTATTATGGGGTCCTGATTCTACTGAAGCGTTCTTGCAGCAATCCAATTTAAAGTTGATCATTAGATCGCATGAAGGTCCAGATTCAAGGGACAGTAAGATTGACTTTGATGATATGATAATGGGTTACAGCACAGATCATGATAGAGAATCAGGGAAATTATATACTCTATTTAGCGCTCCAGAGTTCCCACAGTTTGGTAGGAAGAGTTACAACAATGAGGGAGCATATGCTGCACTGAAGCCTCCTAATTTTGAAAGTCCATCCTTCCATACATTTAAAGCTGTAGATAGACCAAAGATAGATGTGTGCTATTATGGTTGTGAAGGACATGATGTAGATTTAGACTTGACGTTAATGGCTCTTCCGGATGCTGTCTCTTCTAAAAACACTAATCCTATTGAGATTAGTTCTGCGGTTGATTTTGAGGCATTAGGCATCTTAAATCCACCTTCTTGGAGCATTACATTGACAGATGATGCGACAGGTACCCAAAATGTTCAAATTCCAAAGGCTCCTGTAGTAGAAGGGCTGCCTTTACCCCCAAACATAGAGGAGCCTCACAAGGCTGCTTATGAATACTTTTTGGAGCTCATCGCTGGGCTGAAATTTATGCTTCAAACAACGGAAAATGAGGGCAAGATTCTCATTCCTCATCGGAAGAGGAAGAAATTCATCTAG 2229 40.15 MENPDDLRPNSNCFKPSITSLEEAEQSSSDNETEDAHLVCCSTTSASVATPISPGLPLLNKCNVGIQADMDDKLETVQNICQKIVDTTNLYSFSKLDDQQVYSLMRLREISHRVINDRDSRVTKNDVISAMCFYINRLAGKCKDIVDILNRMSNKDLDDQRVQQFLRLKELLCGIVDGAKDVETEPSHIAEHGVASDMWMTESLEVEPFDSSNGDVLLGEAQFIVVEDEHEEIGARLQNQYCHLSHINPSVTWPPNGSLTLEWVVEMMQTLDKSSKNYSPAEFQFVMPVTVVDAILDVAASILHKEPNCVEIDCHGEVSKVVIVGDIHGQYHDLLHLFALANFPSENQYYVFNGNYVDRGAWGLEVFLVLSAWKVLMPDRVYLLRGNHETRICTSSYGFEKEVRTKYGEQGEKVYNRCLETFKELPLAAIIAGKVYTTHGGLFRKPCNSNSYVQNGKERNTHELEIGSLEDLSKIERFFIDIPNKDEDPNMILADVLWSDPTKVDGLRRNKDRGAGLLWGPDSTEAFLQQSNLKLIIRSHEGPDSRDSKIDFDDMIMGYSTDHDRESGKLYTLFSAPEFPQFGRKSYNNEGAYAALKPPNFESPSFHTFKAVDRPKIDVCYYGCEGHDVDLDLTLMALPDAVSSKNTNPIEISSAVDFEALGILNPPSWSITLTDDATGTQNVQIPKAPVVEGLPLPPNIEEPHKAAYEYFLELIAGLKFMLQTTENEGKILIPHRKRKKFI 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3231544 3243037 - evm.model.ptg000021l.466 HCH13g0466 556971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0466 742 ProSitePatterns Serine/threonine specific protein phosphatases signature. 384 389 IPR006186 GO:0016787(InterPro)
HCH13g0466 742 PRINTS Serine/threonine phosphatase family signature 475 502 IPR006186 GO:0016787(InterPro)
HCH13g0466 742 PRINTS Serine/threonine phosphatase family signature 569 585 IPR006186 GO:0016787(InterPro)
HCH13g0466 742 PRINTS Serine/threonine phosphatase family signature 420 446 IPR006186 GO:0016787(InterPro)
HCH13g0466 742 PRINTS Serine/threonine phosphatase family signature 383 407 IPR006186 GO:0016787(InterPro)
HCH13g0466 742 PRINTS Serine/threonine phosphatase family signature 320 347 IPR006186 GO:0016787(InterPro)
HCH13g0466 742 PRINTS Serine/threonine phosphatase family signature 350 377 IPR006186 GO:0016787(InterPro)
HCH13g0466 742 Gene3D - 249 629 IPR029052 -
HCH13g0466 742 SMART pp2a_7 287 613 IPR006186 GO:0016787(InterPro)
HCH13g0466 742 SUPERFAMILY Metallo-dependent phosphatases 278 618 IPR029052 -
HCH13g0466 742 MobiDBLite consensus disorder prediction 1 29 - -
HCH13g0466 742 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 232 622 IPR051134 -
HCH13g0466 742 MobiDBLite consensus disorder prediction 10 26 - -
HCH13g0466 742 Pfam Calcineurin-like phosphoesterase 320 541 IPR004843 GO:0016787(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0466 HCH-Chr13:3231544 HCH13g1288 HCH-Chr13:40893258 3.80E-111 dispersed
HCH13g0466 HCH-Chr13:3231544 HCH2g0898 HCH-Chr2:52476012 2.70E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0466 K04460 - csv:101211172 1226.46