Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0471 ATGGCGGGAAACGGTGAAGGTCCAGCGATCGGAATCGATCTTGGAACGACTTATTCGTGTGTAGGAGTGTGGCAACATGATCGTGTTGAGATCATTGCCAATGATCAAGGCAATAGAACGACGCCGTCTTATGTTGCTTTCACTGATACTGAACGTTTGATTGGCGATGCTGCTAAGAATCAGGTTGCTATGAATCCATTGAACACCGTTTTTGATGCAAAGCGGTTGATTGGGAGGAGATTTTCTGATCCATCTGTTCAGAGCGATATAAAGCTATGGCCATTCAAGGTCATCGCCGGTCCGAGCGATAAACCGATGATCGTTGTGAACTACAAAGGTGAAGAAAAGCAATTTTCTGCCGAGGAAATATCGTCGATGGTCCTCGTAAAAATGCGCGAAATTGCGGAAGCTTATCTTGGTACTGATATAAAGAATGCTGTTGTTACTGTCCCTGCTTACTTCAATGACTCTCAGCGCCAGGCTACGAAGGATGCTGGGGTCATTGCCGGCCTTAACGTGCTTCGTATCATCAACGAGCCTACTGCTGCGGCCATAGCTTATGGCCTTGATAAGAAAGCAACTAGTGTTGGGGAGAAAAATGTTTTGATTTTTGATTTGGGTGGAGGGACTTTTGATGTGTCTCTCTTGACAATTGAGGAAGGGATTTTCGAAGTGAAGGCGACGGCCGGGGACACCCATTTGGGAGGTGAGGATTTCGACAATAGGTTGGTTAATCACTTTGTTCAGGAATTCAAGAGGAAGCACAAGAAGGATATTAGTGGAAATCCGAGGGCTCTTAGGAGGTTGAGAACTGCTTGTGAGAGAGCCAAGAGGACTCTTTCATCTACGGCACAAACGACGATTGAGATCGACTCGTTGTATGAGGGAATCGATTTCTACTCGACCATTACTCGTGCTAGATTTGAGGAGATGAATATGGATCTCTTCAGGAAGTGTATGGAGCCAGTTGAGAAGTGTTTGAGAGATGCTAAGATGGATAAAAGCACTGTTCATGATGTTGTTCTTGTTGGTGGCTCGACAAGGATTCCTAAGGTGCAACAGCTTTTGCAGGATTTCTTCAATGGCAAAGAGCTCTGCAAGAGTATCAATCCTGACGAGGCAGTTGCTTATGGAGCTGCTGTGCAAGCTGCAATATTGAGTGGTGAAGGAAATGAGAGAGTTCAGGATCTTTTGCTCTTGGATGTTACTCCTCTGTCCCTTGGTTTGGAGACTGCAGGAGGTGTGATGACTGTTCTGATTCCAAGGAATACGACCATTCCGACGAAGAAGGAGCAGGTCTTTTCGACTTATTCGGATAATCAACCTGGGGTTCTTATCCAGGTCTATGAGGGTGAAAGGACAAGAACCAAAGATAACAATTTATTGGGCAAGTTCGAGCTTTCTGGTATCCCTCCAGCTCCCAGAGGTGTCCCGCAGATCAACGTCTGCTTCGACATTGATGCTAACGGTATCCTAAATGTTTCCGCTGAGGACAAGACCACAGGACAGAAGAACAAGATCACCATTACCAACGACAAAGGAAGGTTGTCTAAAGAGGATATCGAGAAGATGGTCCAGGAAGCAGAGAAATACAAGGCTCAGGATGAGGAACACAAGAAGAAAGTAGATGCGAAAAATGCATTGGAGAATTATGCCTACAACATGAGGAACACCATCAAAGATGAAAAGATCGGTGGTAAGCTTGCCCCAGGTGACAAGAAAAAGATAGAGGATGCTGTTGAACAAGCCATTCAATGGCTAGATGGTAACCAGTTAGCAGAGGCTGATGAGTTTGAAGATAAGATGAAGGAACTTGAAAGCCTTTGCAACCCCATCATAGCCAAGATGTATCAAGGTAGTGGTGGTGACATGGGCGGTGCTGCTATGGATGGCGATTTTCCTGGTGCTAGCGGTGGCGGCAGTGGTGGTGCTGGTCCTAAAATTGAAGAAGTTGATTAA 1959 45.69 MAGNGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPLNTVFDAKRLIGRRFSDPSVQSDIKLWPFKVIAGPSDKPMIVVNYKGEEKQFSAEEISSMVLVKMREIAEAYLGTDIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEEMNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNERVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTKDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEDIEKMVQEAEKYKAQDEEHKKKVDAKNALENYAYNMRNTIKDEKIGGKLAPGDKKKIEDAVEQAIQWLDGNQLAEADEFEDKMKELESLCNPIIAKMYQGSGGDMGGAAMDGDFPGASGGGSGGAGPKIEEVD 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3261085 3263319 - evm.model.ptg000021l.471 HCH13g0471 556976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0471 652 MobiDBLite consensus disorder prediction 623 652 - -
HCH13g0471 652 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
HCH13g0471 652 FunFam Heat shock 70 kDa protein 71 126 - -
HCH13g0471 652 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
HCH13g0471 652 FunFam Heat shock 70 kDa 235 318 - -
HCH13g0471 652 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 622 IPR029048 -
HCH13g0471 652 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 545 IPR029047 -
HCH13g0471 652 FunFam Heat shock cognate 70 kDa protein 2 319 366 - -
HCH13g0471 652 CDD HSPA1-2_6-8-like_NBD 9 387 - -
HCH13g0471 652 Gene3D - 192 366 - -
HCH13g0471 652 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
HCH13g0471 652 FunFam Heat shock 70 kDa 391 545 - -
HCH13g0471 652 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
HCH13g0471 652 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
HCH13g0471 652 Gene3D Actin; Chain A, domain 4 235 318 - -
HCH13g0471 652 PANTHER HEAT SHOCK PROTEIN 70KDA 9 582 IPR013126 GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0140662(InterPro)
HCH13g0471 652 Gene3D - 71 126 - -
HCH13g0471 652 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
HCH13g0471 652 PRINTS 70kDa heat shock protein signature 58 66 - -
HCH13g0471 652 PRINTS 70kDa heat shock protein signature 396 415 - -
HCH13g0471 652 PRINTS 70kDa heat shock protein signature 8 21 - -
HCH13g0471 652 PRINTS 70kDa heat shock protein signature 36 48 - -
HCH13g0471 652 PRINTS 70kDa heat shock protein signature 209 219 - -
HCH13g0471 652 PRINTS 70kDa heat shock protein signature 337 353 - -
HCH13g0471 652 PRINTS 70kDa heat shock protein signature 146 166 - -
HCH13g0471 652 PRINTS 70kDa heat shock protein signature 369 389 - -
HCH13g0471 652 PRINTS 70kDa heat shock protein signature 477 493 - -
HCH13g0471 652 Gene3D - 10 384 - -
HCH13g0471 652 FunFam Heat shock 70 kDa protein 539 652 - -
HCH13g0471 652 FunFam Heat shock protein 70 10 196 - -
HCH13g0471 652 Coils Coil 521 541 - -
HCH13g0471 652 FunFam Heat shock 70 kDa protein 197 260 - -
HCH13g0471 652 Gene3D - 546 619 IPR029048 -
HCH13g0471 652 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0203 HCH-Chr11:1912135 HCH13g0471 HCH-Chr13:3261085 0.00E+00 dispersed
HCH13g0471 HCH-Chr13:3261085 HCH6g1173 HCH-Chr6:46205040 5.30E-218 dispersed
HCH13g0464 HCH-Chr13:3227664 HCH13g0471 HCH-Chr13:3261085 0.00E+00 proximal
HCH11g0951 HCH-Chr11:40906720 HCH13g0471 HCH-Chr13:3261085 1.40E-157 transposed
HCH5g0656 HCH-Chr5:4740164 HCH13g0471 HCH-Chr13:3261085 4.70E-230 transposed
HCH7g1200 HCH-Chr7:44902576 HCH13g0471 HCH-Chr13:3261085 9.80E-75 transposed
HCH8g0108 HCH-Chr8:4325933 HCH13g0471 HCH-Chr13:3261085 1.40E-226 transposed
HCH8g0950 HCH-Chr8:45700451 HCH13g0471 HCH-Chr13:3261085 3.4e-313 transposed
HCH13g0471 HCH-Chr13:3261085 HCH9g0659 HCH-Chr9:4384754 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0471 K03283 - vvi:100265651 1192.56