Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0472 ATGGTTTTCTCATCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCGCAGCAACCAAATCAGCTCCCAGGAAGTGGAAGTAGTGAGAATAATCTACAGCTTCCACCTCCACCCCCACCTCCACAAGGTGGAGGCGGTGGTGGTGCTGGTTCGATTCGTCCTGGTTCTATGACGGATCGAGCCCGGATGGCGAAGATACCTCAACCGGAGGCGGGACTAAAATGTCCTAGGTGTGAATCTACAAACACAAAGTTTTGTTACTTCAACAATTATAGCCTGACTCAACCGCGGCACTTCTGCAAGGCTTGTCGACGGTACTGGACCAGAGGCGGTGCGATGAGAAACGTACCGGTCGGTGGAGGGTGCCGACGATCAAGCAAAAGAAGCAAAGGAAGTAATAGATCAAAATCTCCAGCTGGTTCAAATACTTCCACAAGCACAGTCTCTTCCAACAGCTGCACAACTGATATAATCAGTCATTTGGCTCCTCCACCACCACCCCACTTGCCCTTTTTAGCTCCTTTACATCATCTCAGTGATTTTGGGAATATTAGTTTAAACTTTGAAGGACTTCAAATTCCAGCACTGTCATCAGGCGGGGTCGGTGCGGGCGATCAATCAATCTTATCAAATGGGGTTGCGGATCAACCTTGGAAAATACCCTTTTTTGCAAACTTGCAACAACAAAATGGGTTGTATTCTTCATTTACAAGTGATCAAGATGGCGATTTCTCGAATTATCAAGGCGCAGCACCGGCTGGGCAGTTTCGTTTGACTAAGCCATTGGATAATGGGTTCTCTCAATTGAGTAATAACTTGAAAATGGAAGAGACACAAGGGCTTAATTTGTCAAGAAATTTTCTGGGAATCCAAGGAAATGATCAATTCTGGAGTACTAATACTGCTGGAAATGCATGGACTGATCAGATCTCTGATCATTTCACTTCATCTTCTTCAACAAGCCATCTCTTGTAA 975 45.54 MVFSSVPVFLDPPNWPQQPNQLPGSGSSENNLQLPPPPPPPQGGGGGGAGSIRPGSMTDRARMAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGAMRNVPVGGGCRRSSKRSKGSNRSKSPAGSNTSTSTVSSNSCTTDIISHLAPPPPPHLPFLAPLHHLSDFGNISLNFEGLQIPALSSGGVGAGDQSILSNGVADQPWKIPFFANLQQQNGLYSSFTSDQDGDFSNYQGAAPAGQFRLTKPLDNGFSQLSNNLKMEETQGLNLSRNFLGIQGNDQFWSTNTAGNAWTDQISDHFTSSSSTSHLL 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3272594 3273712 + evm.model.ptg000021l.472 HCH13g0472 556977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0472 324 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 61 151 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g0472 324 Pfam Dof domain, zinc finger 73 127 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH13g0472 324 MobiDBLite consensus disorder prediction 1 56 - -
HCH13g0472 324 ProSitePatterns Zinc finger Dof-type signature. 75 111 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH13g0472 324 MobiDBLite consensus disorder prediction 114 151 - -
HCH13g0472 324 ProSiteProfiles Zinc finger Dof-type profile. 73 127 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH13g0472 324 MobiDBLite consensus disorder prediction 132 151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0472 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0472 HCH-Chr13:3272594 HCH3g1275 HCH-Chr3:48332379 3.30E-27 dispersed
HCH1g0461 HCH-Chr1:53141110 HCH13g0472 HCH-Chr13:3272594 1.70E-60 wgd
HCH11g0198 HCH-Chr11:1883786 HCH13g0472 HCH-Chr13:3272594 9.50E-52 wgd
HCH13g0472 HCH-Chr13:3272594 HCH2g1095 HCH-Chr2:53827983 8.90E-49 wgd
HCH13g0472 HCH-Chr13:3272594 HCH3g1348 HCH-Chr3:51161943 1.20E-48 wgd
HCH13g0472 HCH-Chr13:3272594 HCH9g0661 HCH-Chr9:4395564 1.70E-44 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH3g0702 . 9 164 C2C2-Dof Transcription Factor Family AT1G29160 56.3 1.5e-45 179.5
HCH14g0987 . 11 158 C2C2-Dof Transcription Factor Family AT1G29160 51.2 1.8e-40 162.5
HCH3g0702 . 9 164 C2C2-Dof Transcription Factor Family AT2G34140 56.1 9.8e-47 183.3
HCH14g0987 . 11 158 C2C2-Dof Transcription Factor Family AT2G34140 51.2 7.0e-37 150.6
HCH9g0661 . 1 137 C2C2-Dof Transcription Factor Family AT2G37590 68.8 3.2e-38 156.0
HCH13g0472 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 63.8 7.2e-38 154.8
HCH3g1348 . 1 134 C2C2-Dof Transcription Factor Family AT2G37590 56.0 6.1e-37 151.8
HCH14g0246 . 1 215 C2C2-Dof Transcription Factor Family AT5G66940 51.3 6.9e-48 187.6
HCH9g0661 . 1 137 C2C2-Dof Transcription Factor Family AT5G02460 64.4 3.0e-38 156.4
HCH13g0472 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 62.6 9.6e-37 151.4
HCH3g1348 . 61 134 C2C2-Dof Transcription Factor Family AT5G02460 87.8 1.6e-36 150.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013092 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32798 PF02701 zf-Dof 2.30E-31 No_clan HCH TF