Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0472 ATGGTTTTCTCATCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCGCAGCAACCAAATCAGCTCCCAGGAAGTGGAAGTAGTGAGAATAATCTACAGCTTCCACCTCCACCCCCACCTCCACAAGGTGGAGGCGGTGGTGGTGCTGGTTCGATTCGTCCTGGTTCTATGACGGATCGAGCCCGGATGGCGAAGATACCTCAACCGGAGGCGGGACTAAAATGTCCTAGGTGTGAATCTACAAACACAAAGTTTTGTTACTTCAACAATTATAGCCTGACTCAACCGCGGCACTTCTGCAAGGCTTGTCGACGGTACTGGACCAGAGGCGGTGCGATGAGAAACGTACCGGTCGGTGGAGGGTGCCGACGATCAAGCAAAAGAAGCAAAGGAAGTAATAGATCAAAATCTCCAGCTGGTTCAAATACTTCCACAAGCACAGTCTCTTCCAACAGCTGCACAACTGATATAATCAGTCATTTGGCTCCTCCACCACCACCCCACTTGCCCTTTTTAGCTCCTTTACATCATCTCAGTGATTTTGGGAATATTAGTTTAAACTTTGAAGGACTTCAAATTCCAGCACTGTCATCAGGCGGGGTCGGTGCGGGCGATCAATCAATCTTATCAAATGGGGTTGCGGATCAACCTTGGAAAATACCCTTTTTTGCAAACTTGCAACAACAAAATGGGTTGTATTCTTCATTTACAAGTGATCAAGATGGCGATTTCTCGAATTATCAAGGCGCAGCACCGGCTGGGCAGTTTCGTTTGACTAAGCCATTGGATAATGGGTTCTCTCAATTGAGTAATAACTTGAAAATGGAAGAGACACAAGGGCTTAATTTGTCAAGAAATTTTCTGGGAATCCAAGGAAATGATCAATTCTGGAGTACTAATACTGCTGGAAATGCATGGACTGATCAGATCTCTGATCATTTCACTTCATCTTCTTCAACAAGCCATCTCTTGTAA 975 45.54 MVFSSVPVFLDPPNWPQQPNQLPGSGSSENNLQLPPPPPPPQGGGGGGAGSIRPGSMTDRARMAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGAMRNVPVGGGCRRSSKRSKGSNRSKSPAGSNTSTSTVSSNSCTTDIISHLAPPPPPHLPFLAPLHHLSDFGNISLNFEGLQIPALSSGGVGAGDQSILSNGVADQPWKIPFFANLQQQNGLYSSFTSDQDGDFSNYQGAAPAGQFRLTKPLDNGFSQLSNNLKMEETQGLNLSRNFLGIQGNDQFWSTNTAGNAWTDQISDHFTSSSSTSHLL 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3272594 3273712 + evm.model.ptg000021l.472 HCH13g0472 556977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0472 324 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 61 151 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g0472 324 Pfam Dof domain, zinc finger 73 127 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH13g0472 324 MobiDBLite consensus disorder prediction 1 56 - -
HCH13g0472 324 ProSitePatterns Zinc finger Dof-type signature. 75 111 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH13g0472 324 MobiDBLite consensus disorder prediction 114 151 - -
HCH13g0472 324 ProSiteProfiles Zinc finger Dof-type profile. 73 127 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH13g0472 324 MobiDBLite consensus disorder prediction 132 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0472 HCH-Chr13:3272594 HCH3g1275 HCH-Chr3:48332379 3.30E-27 dispersed
HCH1g0461 HCH-Chr1:53141110 HCH13g0472 HCH-Chr13:3272594 1.70E-60 wgd
HCH11g0198 HCH-Chr11:1883786 HCH13g0472 HCH-Chr13:3272594 9.50E-52 wgd
HCH13g0472 HCH-Chr13:3272594 HCH2g1095 HCH-Chr2:53827983 8.90E-49 wgd
HCH13g0472 HCH-Chr13:3272594 HCH3g1348 HCH-Chr3:51161943 1.20E-48 wgd
HCH13g0472 HCH-Chr13:3272594 HCH9g0661 HCH-Chr9:4395564 1.70E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32798 PF02701 zf-Dof 2.30E-31 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0472 - - - 0.0