Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH13g0472 | ATGGTTTTCTCATCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCGCAGCAACCAAATCAGCTCCCAGGAAGTGGAAGTAGTGAGAATAATCTACAGCTTCCACCTCCACCCCCACCTCCACAAGGTGGAGGCGGTGGTGGTGCTGGTTCGATTCGTCCTGGTTCTATGACGGATCGAGCCCGGATGGCGAAGATACCTCAACCGGAGGCGGGACTAAAATGTCCTAGGTGTGAATCTACAAACACAAAGTTTTGTTACTTCAACAATTATAGCCTGACTCAACCGCGGCACTTCTGCAAGGCTTGTCGACGGTACTGGACCAGAGGCGGTGCGATGAGAAACGTACCGGTCGGTGGAGGGTGCCGACGATCAAGCAAAAGAAGCAAAGGAAGTAATAGATCAAAATCTCCAGCTGGTTCAAATACTTCCACAAGCACAGTCTCTTCCAACAGCTGCACAACTGATATAATCAGTCATTTGGCTCCTCCACCACCACCCCACTTGCCCTTTTTAGCTCCTTTACATCATCTCAGTGATTTTGGGAATATTAGTTTAAACTTTGAAGGACTTCAAATTCCAGCACTGTCATCAGGCGGGGTCGGTGCGGGCGATCAATCAATCTTATCAAATGGGGTTGCGGATCAACCTTGGAAAATACCCTTTTTTGCAAACTTGCAACAACAAAATGGGTTGTATTCTTCATTTACAAGTGATCAAGATGGCGATTTCTCGAATTATCAAGGCGCAGCACCGGCTGGGCAGTTTCGTTTGACTAAGCCATTGGATAATGGGTTCTCTCAATTGAGTAATAACTTGAAAATGGAAGAGACACAAGGGCTTAATTTGTCAAGAAATTTTCTGGGAATCCAAGGAAATGATCAATTCTGGAGTACTAATACTGCTGGAAATGCATGGACTGATCAGATCTCTGATCATTTCACTTCATCTTCTTCAACAAGCCATCTCTTGTAA | 975 | 45.54 | MVFSSVPVFLDPPNWPQQPNQLPGSGSSENNLQLPPPPPPPQGGGGGGAGSIRPGSMTDRARMAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGAMRNVPVGGGCRRSSKRSKGSNRSKSPAGSNTSTSTVSSNSCTTDIISHLAPPPPPHLPFLAPLHHLSDFGNISLNFEGLQIPALSSGGVGAGDQSILSNGVADQPWKIPFFANLQQQNGLYSSFTSDQDGDFSNYQGAAPAGQFRLTKPLDNGFSQLSNNLKMEETQGLNLSRNFLGIQGNDQFWSTNTAGNAWTDQISDHFTSSSSTSHLL | 324 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 3272594 | 3273712 | + | evm.model.ptg000021l.472 | HCH13g0472 | 556977 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH13g0472 | 324 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 61 | 151 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH13g0472 | 324 | Pfam | Dof domain, zinc finger | 73 | 127 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
HCH13g0472 | 324 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - | |
HCH13g0472 | 324 | ProSitePatterns | Zinc finger Dof-type signature. | 75 | 111 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
HCH13g0472 | 324 | MobiDBLite | consensus disorder prediction | 114 | 151 | - | - | |
HCH13g0472 | 324 | ProSiteProfiles | Zinc finger Dof-type profile. | 73 | 127 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
HCH13g0472 | 324 | MobiDBLite | consensus disorder prediction | 132 | 151 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g0472 | HCH-Chr13:3272594 | HCH3g1275 | HCH-Chr3:48332379 | 3.30E-27 | dispersed | |
HCH1g0461 | HCH-Chr1:53141110 | HCH13g0472 | HCH-Chr13:3272594 | 1.70E-60 | wgd | |
HCH11g0198 | HCH-Chr11:1883786 | HCH13g0472 | HCH-Chr13:3272594 | 9.50E-52 | wgd | |
HCH13g0472 | HCH-Chr13:3272594 | HCH2g1095 | HCH-Chr2:53827983 | 8.90E-49 | wgd | |
HCH13g0472 | HCH-Chr13:3272594 | HCH3g1348 | HCH-Chr3:51161943 | 1.20E-48 | wgd | |
HCH13g0472 | HCH-Chr13:3272594 | HCH9g0661 | HCH-Chr9:4395564 | 1.70E-44 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32798 | PF02701 | zf-Dof | 2.30E-31 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH13g0472 | - | - | - | 0.0 |