Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0492 ATGGCACCAACCATTATAATAACAACCCTACTAATATCTTCCTTACTTATCTCATCCTCAGCCGAAACCGAAACCGAAACCACGAGATCATTTTACGTGGGCAGGCAGTGGGAGACCGCCCACGCTACATTCTACGGCGGCAATGACGCCTCCGGCACCATGGGTGGAGCTTGTGGCTATGGCAACTTGTATAGCCAAGGCTACGGCGTGAACACGGCAGCATTAAGTACCGCTTTATTCAACAATGGGTTTAGCTGTGGAGCTTGCTTTGAGATCAAATGCGTCAATGATCCACAATGGTGCCATCCTGGAAATCCCTCCATCTTTGTCACTGCCACCAATTTTTGCCCACCAAACTATGCTTTACCTAATGATAATGGTGGTTGGTGTAATCCTCCTCGTTCCCATTTTGATCTTTCCATGCCTGTCTTCCTCAAGATCGCTCAGTATCGTGCCGGAATCGTACCCGTCTCTTTTCGACGGGTACCCTGCCGGAAGCAAGGAGGGATCAGGTTCACAATCAACGGCTTCAAATACTTCAATTTGGTTTTAATCACCAACGTCGCGGGTGCAGGGGATATCGTAAGTGCGAGCATCAAGGGGTCAAAGACAGGGTGGATGAGCATGACACGTAACTGGGGTCAAAACTGGCAGTCAAACACAGTTCTGATTGGTCAGTCACTCTCCTTCAGTGTCAAAGCCAGTGACGGCCGGATTTCCACTTCATGGAACATTGCTCCTTCGGATTGGCAGTTTGGTCAAACTTTCACTGGAAAAAATTTCAGATTCTAA 792 48.23 MAPTIIITTLLISSLLISSSAETETETTRSFYVGRQWETAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCVNDPQWCHPGNPSIFVTATNFCPPNYALPNDNGGWCNPPRSHFDLSMPVFLKIAQYRAGIVPVSFRRVPCRKQGGIRFTINGFKYFNLVLITNVAGAGDIVSASIKGSKTGWMSMTRNWGQNWQSNTVLIGQSLSFSVKASDGRISTSWNIAPSDWQFGQTFTGKNFRF 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3426508 3427654 - evm.model.ptg000021l.492 HCH13g0492 556997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0492 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 169 IPR007112 -
HCH13g0492 263 Pfam Expansin C-terminal domain 170 247 IPR007117 -
HCH13g0492 263 FunFam Expansin 26 165 - -
HCH13g0492 263 FunFam Expansin 169 261 - -
HCH13g0492 263 SMART dpbb_1 72 159 IPR007112 -
HCH13g0492 263 CDD DPBB_EXPA_N 36 164 - -
HCH13g0492 263 Gene3D - 21 165 IPR036908 -
HCH13g0492 263 SUPERFAMILY PHL pollen allergen 166 258 IPR036749 -
HCH13g0492 263 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576(InterPro)
HCH13g0492 263 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576(InterPro)
HCH13g0492 263 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576(InterPro)
HCH13g0492 263 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576(InterPro)
HCH13g0492 263 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576(InterPro)
HCH13g0492 263 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576(InterPro)
HCH13g0492 263 Pfam Lytic transglycolase 72 159 IPR009009 -
HCH13g0492 263 SUPERFAMILY Barwin-like endoglucanases 36 187 IPR036908 -
HCH13g0492 263 Gene3D - 169 261 IPR036749 -
HCH13g0492 263 PANTHER EXPANSIN-A15 19 261 IPR002963 GO:0009664(InterPro)
HCH13g0492 263 PRINTS Expansin signature 168 180 IPR002963 GO:0009664(InterPro)
HCH13g0492 263 PRINTS Expansin signature 108 118 IPR002963 GO:0009664(InterPro)
HCH13g0492 263 PRINTS Expansin signature 94 105 IPR002963 GO:0009664(InterPro)
HCH13g0492 263 PRINTS Expansin signature 127 144 IPR002963 GO:0009664(InterPro)
HCH13g0492 263 PRINTS Expansin signature 67 81 IPR002963 GO:0009664(InterPro)
HCH13g0492 263 PRINTS Expansin signature 215 236 IPR002963 GO:0009664(InterPro)
HCH13g0492 263 PRINTS Expansin signature 144 157 IPR002963 GO:0009664(InterPro)
HCH13g0492 263 PRINTS Expansin signature 180 201 IPR002963 GO:0009664(InterPro)
HCH13g0492 263 PRINTS Expansin signature 244 260 IPR002963 GO:0009664(InterPro)
HCH13g0492 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 258 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1076 HCH-Chr10:38470875 HCH13g0492 HCH-Chr13:3426508 1.50E-73 dispersed
HCH13g0492 HCH-Chr13:3426508 HCH1g0288 HCH-Chr1:45418363 4.60E-104 dispersed
HCH7g0380 HCH-Chr7:2758765 HCH13g0492 HCH-Chr13:3426508 1.20E-69 transposed
HCH1g0451 HCH-Chr1:53033480 HCH13g0492 HCH-Chr13:3426508 3.30E-123 wgd
HCH13g0492 HCH-Chr13:3426508 HCH2g1077 HCH-Chr2:53739421 4.40E-123 wgd
HCH13g0492 HCH-Chr13:3426508 HCH3g1367 HCH-Chr3:51405928 1.90E-118 wgd
HCH13g0492 HCH-Chr13:3426508 HCH9g0677 HCH-Chr9:4503623 3.10E-124 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0492 - - - 0.0